View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7272_low_2 (Length: 325)
Name: NF7272_low_2
Description: NF7272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7272_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 32557745 - 32558048
Alignment:
| Q |
17 |
agttatgattgaaaccgggtcgatagacaaccccgggttttgttgaataggaaccggttcaggttgaagaacaaaagaaaggtcgtaaaaactttgagnn |
116 |
Q |
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| T |
32557745 |
agttatgattgaaaccgggtcgatagacaaccccgggttttgttgaataggaacgggttcaggttgaagaacaaaagaaaggtcgtaaaaactttgaggt |
32557844 |
T |
|
| Q |
117 |
nnnnnnnnnnnnnnnnn---gtcgggtgagaggattggagtaacagaagaaccaggaggggtatcatggtaaacaaaattggtacgagcacgtgagccac |
213 |
Q |
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| T |
32557845 |
tgttgttgttgttgttgttggtcaggtgagaggattggagtaacagaagaaccaggaggggtatcatggtaaacaaaattggtacgagcacgtgagccac |
32557944 |
T |
|
| Q |
214 |
gcatgccacgtgcggctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggatcgcgtatctc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32557945 |
gcatgccacgtgcggctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggatcgcgtatctc |
32558044 |
T |
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| Q |
314 |
tgct |
317 |
Q |
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|||| |
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| T |
32558045 |
tgct |
32558048 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 6507659 - 6507735
Alignment:
| Q |
228 |
gctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggatc |
304 |
Q |
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||||| || ||||| ||||| ||||||| |||||| || |||||||||||||| ||||||||||| |||| |||||| |
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| T |
6507659 |
gctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatc |
6507735 |
T |
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