View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7272_low_3 (Length: 309)

Name: NF7272_low_3
Description: NF7272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7272_low_3
NF7272_low_3
[»] chr6 (1 HSPs)
chr6 (51-298)||(1003792-1004039)
[»] chr7 (4 HSPs)
chr7 (232-291)||(37914756-37914815)
chr7 (231-286)||(23572084-23572140)
chr7 (178-235)||(23571991-23572048)
chr7 (255-291)||(41082053-41082089)
[»] chr3 (1 HSPs)
chr3 (232-277)||(33702208-33702254)
[»] chr5 (3 HSPs)
chr5 (178-224)||(35912631-35912677)
chr5 (232-279)||(32915398-32915446)
chr5 (250-278)||(26018221-26018249)
[»] chr4 (1 HSPs)
chr4 (232-280)||(51410416-51410465)
[»] chr2 (1 HSPs)
chr2 (232-280)||(41112969-41113018)
[»] scaffold0041 (1 HSPs)
scaffold0041 (255-291)||(99185-99221)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 51 - 298
Target Start/End: Complemental strand, 1004039 - 1003792
Alignment:
Q  51 acaaatacaaaatggggacatgttaatctcttcgtttaatttcattcaaaattaattttttatttgttgacatgtatagttgtggagctaacttggagat 150  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  1004039 acaaatacaaaatggggacatgttaatctcttcatttaatttcattcaaaattaatttcttatttgttgacatgtatagttgtggagctaacttggacat 1003940  T
Q  151 aaaacatggcacgtcaccagtatcggaggagccagaaattatgaatagtggggacatcattatacaaaatttgtcggaagggagaaagagatgatttagg 250  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||    
T  1003939 aaaacatggcacgtcaccagtatcggaggagccaggaattatgaatagtggaaacatcattatacgaaatttgtcggaagggagaaagagatgatttagg 1003840  T
Q  251 tgagtttagaaataaaatctcacaaaaacgccatgtaagataagtatt 298  Q
    |||||||||||||||||||||||||||| | ||||| |||||||||||    
T  1003839 tgagtttagaaataaaatctcacaaaaatgtcatgtgagataagtatt 1003792  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 37914815 - 37914756
Alignment:
Q  232 gagaaagagatgatttaggtgagtttagaaataaaatctcacaaaaacgccatgtaagat 291  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||    
T  37914815 gagaaagagatgatttaggtgggtttagaaataaaatttcacaaaaacggcatgtgagat 37914756  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 23572084 - 23572140
Alignment:
Q  231 ggagaaagagatgatt-taggtgagtttagaaataaaatctcacaaaaacgccatgt 286  Q
    |||| ||||||||||| |||||| ||||||||||||| ||||||||||||| |||||    
T  23572084 ggaggaagagatgattgtaggtgggtttagaaataaactctcacaaaaacggcatgt 23572140  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 23571991 - 23572048
Alignment:
Q  178 ggagccagaaattatgaatagtggggacatcattatacaaaatttgtcggaagggaga 235  Q
    |||| |||||||| |||||||||||| || |||||||| |||||||| || |||||||    
T  23571991 ggaggcagaaattttgaatagtgggggcaccattatacgaaatttgttgggagggaga 23572048  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 41082053 - 41082089
Alignment:
Q  255 tttagaaataaaatctcacaaaaacgccatgtaagat 291  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  41082053 tttagaaataaaatctcacaaaaacgacatgtgagat 41082089  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 33702208 - 33702254
Alignment:
Q  232 gagaaagagatgatt-taggtgagtttagaaataaaatctcacaaaa 277  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  33702208 gagaaagagatgattgtaggtgagtttagaaataaaatctcacaaaa 33702254  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 35912677 - 35912631
Alignment:
Q  178 ggagccagaaattatgaatagtggggacatcattatacaaaatttgt 224  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||||    
T  35912677 ggagccagaaattttgaatagttgggacatcattacacaaaatttgt 35912631  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 32915446 - 32915398
Alignment:
Q  232 gagaaagagatgatt-taggtgagtttagaaataaaatctcacaaaaac 279  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  32915446 gagaaagagatgatcgtaggtgggtttagaaataaaatctcacaaaaac 32915398  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 26018221 - 26018249
Alignment:
Q  250 gtgagtttagaaataaaatctcacaaaaa 278  Q
    |||||||||||||||||||||||||||||    
T  26018221 gtgagtttagaaataaaatctcacaaaaa 26018249  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 51410416 - 51410465
Alignment:
Q  232 gagaaagagatgatt-taggtgagtttagaaataaaatctcacaaaaacg 280  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  51410416 gagaaagagatgatcataggtgggtttagaaataaaatctcacaaaaacg 51410465  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 41113018 - 41112969
Alignment:
Q  232 gagaaagagatgatt-taggtgagtttagaaataaaatctcacaaaaacg 280  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||    
T  41113018 gagaaagagatgatcataggtgggtttagaaataaaatctcacaaaaacg 41112969  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 99185 - 99221
Alignment:
Q  255 tttagaaataaaatctcacaaaaacgccatgtaagat 291  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  99185 tttagaaataaaatctcacaaaaacgacatgtgagat 99221  T

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