View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7273_high_2 (Length: 260)
Name: NF7273_high_2
Description: NF7273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7273_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 5174709 - 5174882
Alignment:
| Q |
17 |
ataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttc |
116 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5174709 |
ataacaatattgttggccctcataacagttttgtgcatcaatccacgttggcgtatggcctggttttattatatcagtaagtttatgcgtagattttttc |
5174808 |
T |
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| Q |
117 |
caacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtctcaaatatttggatattgtaa |
196 |
Q |
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||||||||||||||||||||||| | |||||| ||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
5174809 |
caacttttccattgtattgaagagtgtccata------gtttaaactttatgtggagtctcaaatatttggatattgtaa |
5174882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 5197450 - 5197629
Alignment:
| Q |
17 |
ataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttc |
116 |
Q |
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||||||||| | |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5197450 |
ataacaatactattggccttcataacagtgttgtgcatcaatccacgttggcgcatggcctggttttattacatcagtaagtttatgcgtagattctttc |
5197549 |
T |
|
| Q |
117 |
caacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtctcaaatatttggatattgtaa |
196 |
Q |
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| T |
5197550 |
caacttttccattgtattgaagagtggccatagttcctgttgaaacattatgtggagtctcaaatatttgcatattgtaa |
5197629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 4840813 - 4840640
Alignment:
| Q |
17 |
ataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttc |
116 |
Q |
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|||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840813 |
ataacaatattgttagccttcataacagtgttgtgcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttc |
4840714 |
T |
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| Q |
117 |
caacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtctcaaatatttggatattgtaa |
196 |
Q |
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|||||||||||||||||| |||| | |||||| ||| ||||||||| |||||||| ||||||||||||||||||| |
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| T |
4840713 |
caacttttccattgtattaaagagtgtccata------gtttaaactttatgtggagtctaaaatatttggatattgtaa |
4840640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 5184064 - 5184229
Alignment:
| Q |
30 |
tggccttcataacagttttgtgcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaacttttccatt |
129 |
Q |
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||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
5184064 |
tggccttcataactgtgttgggcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattctttccatcttttccatt |
5184163 |
T |
|
| Q |
130 |
gtattgaagaatatccatagtacctgttgaaactttatttggagtctcaaatatttggatattgta |
195 |
Q |
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|||||| || | |||||||| |||||||||||||||| |||||||| ||||||||||||| |||| |
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| T |
5184164 |
atattgatgagtgtccatagttcctgttgaaactttatgtggagtctaaaatatttggatactgta |
5184229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 5215595 - 5215774
Alignment:
| Q |
17 |
ataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttc |
116 |
Q |
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|
||||||||| | |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
5215595 |
ataacaatactattggccttcataacagtgttgtgcgtcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtaaaatttttc |
5215694 |
T |
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| Q |
117 |
caacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtctcaaatatttggatattgtaa |
196 |
Q |
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|||| |||||||||||||||||| | || | | ||||||||||||| | || ||||||||||||||||||||||||| |
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| T |
5215695 |
caacgtttccattgtattgaagagtgtctgttattcctgttgaaacttcaagtgaagtctcaaatatttggatattgtaa |
5215774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 4855319 - 4855092
Alignment:
| Q |
17 |
ataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttc |
116 |
Q |
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||||||||| | ||| ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||| ||||||| |
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| T |
4855319 |
ataacaatactactgaccttcataacagtgttg--catcaatccacgttggcgtttggcctggttttattacattagtaagtttgtaggtatcttttttc |
4855222 |
T |
|
| Q |
117 |
caacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtctcaaatatttggatattgtaannnnnnnctttagctttgat |
216 |
Q |
| |
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|||||||||||||||||| |||| | ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||| || |
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| T |
4855221 |
caacttttccattgtattaaagagtgtccgtagtacctgttgaaactttatgtggagtctcaaatatttgggtattgtaatttttatatttaactttaat |
4855122 |
T |
|
| Q |
217 |
ttc-gacagtttaatgttgagacatttgat |
245 |
Q |
| |
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||| |||||||| ||| ||||||||||||| |
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| T |
4855121 |
ttcagacagtttgatgctgagacatttgat |
4855092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 5161770 - 5161949
Alignment:
| Q |
17 |
ataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttc |
116 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||| |||||| | |||||||||||||| |||||||||||||| ||||||||| || ||||||| |
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| T |
5161770 |
ataacaatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcgtatggcttggttttattacattagtaagtttgcacgatttttttttc |
5161869 |
T |
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| Q |
117 |
caacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtctcaaatatttggatattgtaa |
196 |
Q |
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|||||||||||||||| |||||| | | | |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5161870 |
caacttttccattgtactgaagagtgtacgtagtacctgttgaaactttacgtggagtctcaaatatttggatattgtaa |
5161949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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