View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7273_low_1 (Length: 349)
Name: NF7273_low_1
Description: NF7273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7273_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 47010590 - 47010264
Alignment:
| Q |
17 |
gtggaggcactcaatggaaagaaatttgatgacaaggagtggtatgttggaaaagccctnnnnnnntatgaaagggagcttgagctgaaagaaagacacg |
116 |
Q |
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| T |
47010590 |
gtggaggcactcaatggaaagaaatttgatgacaaggagtggtatgttggaaaagccctaaaaaaatatgaaagggagcttgagctgaaagaaagacacg |
47010491 |
T |
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| Q |
117 |
agcagagtatgaaggaaactgttgacaagttttatggtgcaaacttgtatctcaagaacttggatgatagcgtcactgatgaaaaacttagcgaactctt |
216 |
Q |
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| T |
47010490 |
agcagagtatgaaggaaactgttgacaagttttatggtgcaaacttgtatctcaagaacttggatgatagcgtcactgatgaaaaacttagcgaactctt |
47010391 |
T |
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| Q |
217 |
ctccgagtttggtacagtaacttcatgcaaggtgtgtgaatacggttccctttctgttcatatctgcaattgtcaaatcttcatcttcatgaaacttatt |
316 |
Q |
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| T |
47010390 |
ctccgagtttggtacagtaacttcatgcaaggtgtgtgaatacggttccctttttgttcatatctgcaattgtcaaatcttcatcttcatgaaacttatt |
47010291 |
T |
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| Q |
317 |
tcttttttcctgatccacaggttctgc |
343 |
Q |
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| T |
47010290 |
tcttttttcctgatccacagattctgc |
47010264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 5710607 - 5710701
Alignment:
| Q |
158 |
aacttgtatctcaagaacttggatgatagcgtcactgatgaaaaacttagcgaactcttctccgagtttggtacagtaacttcatgcaaggtgtg |
252 |
Q |
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| T |
5710607 |
aacttgtatctcaagaacttggatgattccattactgatgaaaaactcaaggaaatgttctccgagtttggcacaattacttcatacaaggtgtg |
5710701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 33420137 - 33420194
Alignment:
| Q |
15 |
ctgtggaggcactcaatggaaagaaatttgatgacaaggagtggtatgttggaaaagc |
72 |
Q |
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| T |
33420137 |
ctgttgaggctcttaatgggaaaaaaattgatgacaaggaatggtatgttggaaaagc |
33420194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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