View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7273_low_2 (Length: 298)

Name: NF7273_low_2
Description: NF7273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7273_low_2
NF7273_low_2
[»] chr8 (13 HSPs)
chr8 (27-278)||(32166640-32166890)
chr8 (90-278)||(33897618-33897807)
chr8 (98-289)||(35574634-35574827)
chr8 (228-290)||(12736074-12736136)
chr8 (219-293)||(6630529-6630603)
chr8 (97-185)||(29969153-29969241)
chr8 (133-183)||(6803876-6803926)
chr8 (92-183)||(6630316-6630406)
chr8 (211-290)||(42054597-42054676)
chr8 (240-290)||(29969129-29969179)
chr8 (253-290)||(29093581-29093618)
chr8 (229-290)||(31475059-31475120)
chr8 (230-290)||(6630375-6630435)
[»] chr7 (18 HSPs)
chr7 (90-287)||(34891414-34891612)
chr7 (98-287)||(42012690-42012879)
chr7 (90-281)||(3191569-3191760)
chr7 (98-260)||(31171316-31171480)
chr7 (208-289)||(32138880-32138961)
chr7 (228-290)||(23944096-23944158)
chr7 (98-276)||(31152738-31152919)
chr7 (219-281)||(32962393-32962455)
chr7 (223-281)||(34891380-34891438)
chr7 (136-290)||(22593565-22593722)
chr7 (228-290)||(27651503-27651564)
chr7 (105-263)||(8900670-8900831)
chr7 (92-183)||(33362347-33362436)
chr7 (230-281)||(33362414-33362465)
chr7 (224-262)||(7463864-7463902)
chr7 (231-281)||(8354394-8354444)
chr7 (208-244)||(27651379-27651415)
chr7 (208-260)||(29152350-29152402)
[»] chr5 (20 HSPs)
chr5 (97-281)||(7113616-7113804)
chr5 (99-293)||(40483739-40483935)
chr5 (211-289)||(2243310-2243388)
chr5 (208-293)||(973111-973196)
chr5 (97-185)||(2243249-2243335)
chr5 (211-278)||(14138548-14138615)
chr5 (84-185)||(17739908-17740009)
chr5 (224-262)||(972845-972883)
chr5 (208-257)||(7215322-7215371)
chr5 (208-281)||(17736756-17736829)
chr5 (224-281)||(39808234-39808291)
chr5 (84-184)||(7215230-7215329)
chr5 (219-263)||(37077663-37077707)
chr5 (79-194)||(39730369-39730484)
chr5 (229-293)||(40483703-40483766)
chr5 (243-289)||(5205532-5205578)
chr5 (229-287)||(26105491-26105549)
chr5 (228-281)||(22780346-22780399)
chr5 (208-281)||(37077760-37077833)
chr5 (228-277)||(39730312-39730361)
[»] chr2 (21 HSPs)
chr2 (90-290)||(13712743-13712945)
chr2 (98-293)||(9050115-9050313)
chr2 (208-293)||(16576248-16576333)
chr2 (211-290)||(16863459-16863538)
chr2 (98-260)||(38576791-38576955)
chr2 (219-290)||(38576930-38577001)
chr2 (130-187)||(38576707-38576764)
chr2 (230-278)||(2909844-2909892)
chr2 (84-277)||(16576290-16576486)
chr2 (246-293)||(17606618-17606665)
chr2 (98-168)||(9931337-9931406)
chr2 (211-293)||(28282653-28282735)
chr2 (212-293)||(35370402-35370483)
chr2 (98-182)||(25606423-25606506)
chr2 (219-262)||(34176654-34176697)
chr2 (208-290)||(25606366-25606448)
chr2 (208-290)||(35371111-35371193)
chr2 (90-183)||(28282699-28282791)
chr2 (228-288)||(2248931-2248991)
chr2 (208-260)||(28282824-28282876)
chr2 (229-281)||(35373728-35373780)
[»] chr4 (13 HSPs)
chr4 (90-266)||(25234217-25234393)
chr4 (84-262)||(25062361-25062544)
chr4 (163-281)||(15131577-15131698)
chr4 (134-287)||(54000043-54000199)
chr4 (207-293)||(22050851-22050937)
chr4 (219-287)||(20512823-20512891)
chr4 (214-277)||(4115389-4115452)
chr4 (229-290)||(25062340-25062401)
chr4 (224-281)||(54000218-54000275)
chr4 (90-183)||(55897600-55897693)
chr4 (219-290)||(11020074-11020144)
chr4 (92-185)||(22050903-22050995)
chr4 (230-286)||(22050719-22050775)
[»] chr3 (11 HSPs)
chr3 (122-287)||(39341110-39341278)
chr3 (125-281)||(42091793-42091951)
chr3 (209-287)||(46303371-46303449)
chr3 (208-293)||(34761943-34762028)
chr3 (228-290)||(20519289-20519351)
chr3 (84-185)||(54437848-54437949)
chr3 (207-264)||(31758242-31758298)
chr3 (126-183)||(39341283-39341340)
chr3 (219-293)||(48646423-48646496)
chr3 (208-262)||(54437806-54437860)
chr3 (222-278)||(54437651-54437707)
[»] chr1 (22 HSPs)
chr1 (208-289)||(34601435-34601516)
chr1 (208-278)||(46080971-46081041)
chr1 (208-276)||(10775163-10775231)
chr1 (161-287)||(7997185-7997314)
chr1 (219-289)||(52432672-52432742)
chr1 (208-281)||(24873765-24873839)
chr1 (208-281)||(24874598-24874672)
chr1 (171-260)||(44342055-44342145)
chr1 (208-290)||(49897870-49897952)
chr1 (208-289)||(68097-68178)
chr1 (92-185)||(3232179-3232271)
chr1 (92-177)||(7104316-7104400)
chr1 (208-261)||(42819621-42819674)
chr1 (208-290)||(12144970-12145049)
chr1 (232-290)||(3367806-3367864)
chr1 (81-170)||(49897909-49897998)
chr1 (97-170)||(67982-68054)
chr1 (229-290)||(7749024-7749085)
chr1 (84-143)||(68139-68198)
chr1 (229-281)||(3231979-3232031)
chr1 (229-281)||(38839663-38839715)
chr1 (219-281)||(10775028-10775090)
[»] chr6 (10 HSPs)
chr6 (126-278)||(20068000-20068155)
chr6 (208-277)||(32342600-32342669)
chr6 (177-281)||(23577118-23577224)
chr6 (228-281)||(32047194-32047247)
chr6 (211-257)||(20206481-20206527)
chr6 (211-257)||(22100504-22100550)
chr6 (130-185)||(32047262-32047317)
chr6 (101-155)||(23577068-23577121)
chr6 (136-182)||(26236751-26236797)
chr6 (209-270)||(23577009-23577070)
[»] scaffold0136 (1 HSPs)
scaffold0136 (224-293)||(36963-37033)
[»] scaffold1743 (1 HSPs)
scaffold1743 (219-278)||(794-853)
[»] scaffold0047 (1 HSPs)
scaffold0047 (219-266)||(62744-62791)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 27 - 278
Target Start/End: Complemental strand, 32166890 - 32166640
Alignment:
Q  27 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaacttcttatcttcttcatttaacatgtgatttacatctcttt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32166890 caatatatgaatgtggttttttcttacatagctgcttccaatcaaagtgtttcttcgaatttcttatcttcttcatttaacatgtgatttacatctcttt 32166791  T
Q  127 tcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatagtttttcttactatcaatta 226  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32166790 -cgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatgctcatcgatagtttttcttactatcaatta 32166692  T
Q  227 tcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32166691 tcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgt 32166640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 90 - 278
Target Start/End: Original strand, 33897618 - 33897807
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 189  Q
    |||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||  || |||| ||| ||||||||| | ||||| |||||||||||    
T  33897618 ttatctccttcatttaacatgtgatttacatct-ttttcgttctaaaatctaatcgtgtttatcatcagatgtaaattactctcaattaatcaaggaaaa 33897716  T
Q  190 atgtatgctcatcgata-gtttttc-ttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    ||||| |||| ||||||  |||||| |||||||||||||  |||||||||| || ||||||||| ||||| || ||||| |||||||||||    
T  33897717 atgtaggctcgtcgatatatttttctttactatcaattactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgt 33897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 289
Target Start/End: Complemental strand, 35574827 - 35574634
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgta-tg 196  Q
    |||||| ||||| ||||||  |||||||| ||||||||||||||||| || |||||||||| |||||||||||| ||||||||||| ||| |||| |       
T  35574827 ttcattgaacatatgattttaatctcttt-cgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattcatcaatgaataatggagac 35574729  T
Q  197 ctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatct 289  Q
    ||||| ||||  ||||||||||| || | |||  ||||||||||||||||||||||| || |||||||| || ||||||||||| || |||||||    
T  35574728 ctcattgatagggtttttcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatct 35574634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 12736074 - 12736136
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||| |||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  12736074 catttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctc 12736136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 6630603 - 6630529
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    |||||||| |||||||||||||||| ||| ||| |||||||||||||| ||| |||| ||||| |||||||||||    
T  6630603 atcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccatctcatt 6630529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 29969153 - 29969241
Alignment:
Q  97 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcatt-agaggtaaattacccccaattcatcaagg 185  Q
    ||||||| |||||||||| | ||||||||| ||||||| ||||||||  ||||||||||| || ||||||||| || |||||||||||||    
T  29969153 cttcattcaacatgtgatattcatctcttt-cgttccataatcgaattctacttgtcattaaggggtaaattatccacaattcatcaagg 29969241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 6803926 - 6803876
Alignment:
Q  133 caaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    ||||||| |||| ||||||||||||| |||||||||| |||||||||||||    
T  6803926 caaaatcaaatcctacttgtcattaggggtaaattactcccaattcatcaa 6803876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 6630406 - 6630316
Alignment:
Q  92 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    ||||| |||||| |||||||| | | |||||| || | || ||||||| |||| ||||||||||||| |||||||||| | |||||||||||    
T  6630406 atctttttcattcaacatgtgttatccatctcctt-catttcaaaatcaaatcctacttgtcattaggggtaaattactctcaattcatcaa 6630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 42054676 - 42054597
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||||| ||||| || |||||||||||| ||||||| ||| ||||| ||||  || |||||| ||||||| ||||||||    
T  42054676 ttcttacaatcaaataccattttcatcttcagaacataaaatttctttatctatttcattcaatatgtgatctccatctc 42054597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 29969129 - 29969179
Alignment:
Q  240 aagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||||||||||||||||| || |||| |||||||||||||| | ||||||    
T  29969129 aagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctc 29969179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 29093581 - 29093618
Alignment:
Q  253 ttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  29093581 ttcttcatctccttcattcaacatgtgatctccatctc 29093618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 31475059 - 31475120
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||| |||| ||||||||||||||||||||||| ||| |||||  ||||||| | ||||||    
T  31475059 atttttatctcaagaacatcaaacttcttcatcttcttgattcacaatgtgattttcatctc 31475120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 6630435 - 6630375
Alignment:
Q  230 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    |||| |||| ||||||||||||||| |||||||  || |||||||||||| | ||||||||    
T  6630435 tttttatctcaagaacatcaaactttttcatctttttcattcaacatgtgttatccatctc 6630375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 34891414 - 34891612
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 189  Q
    ||||||||||||||||||||||||| || |||||||| | |||| ||||||||| ||| ||||||| || ||||||||||||| | |||||||||||| |    
T  34891414 ttatcttcttcatttaacatgtgatctagatctcttt-cattcccaaatcgaattgtatttgtcatgaggggtaaattacccc-agttcatcaaggaaga 34891511  T
Q  190 atgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtcca 286  Q
    || || ||||| |||||    ||||||||||||| | |||||||||| |||| |||||||||||| |||||||||||||| |||||||||||||| ||||    
T  34891512 atataggctcaccgatatggttttttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctcca 34891611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 287
Target Start/End: Original strand, 42012690 - 42012879
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 197  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||| ||  |||||| || | ||||||| |||||||| |||||||||||||||| |     
T  42012690 ttcatttaagatgtgatttacatct-ttttcgttccaaaatcgaatcatatatgtcatgagggataaatta-ccccaattaatcaaggaaaaatgtaagt 42012787  T
Q  198 tcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccat 287  Q
    ||||| |||    |||||||||  |||| ||| || ||| |||  ||||||||||||||| |||||||  ||||||||||||||||| |||||    
T  42012788 tcatcaatatggttttttcttagaatcagttaccacttttatcacaagaacatcaaactttttcatct-atttattcaacatgtgatctccat 42012879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 281
Target Start/End: Complemental strand, 3191760 - 3191569
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 189  Q
    |||||| |||||||||| |||||||||||||| |||| | || |||||| |||||||| ||| ||| |  ||||||||||| ||||| |||  |||||||    
T  3191760 ttatctccttcatttaagatgtgatttacatcccttt-catttcaaaattgaatcgtatttgacatgaagggtaaattaccgccaatacatggaggaaaa 3191662  T
Q  190 atgtatgctcatcgatagtttt-tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||  ||||   ||  |||| | ||||||||| ||||  ||||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  3191661 atgtagactcacatatgattttcttttactatcagttattcttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgtgat 3191569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 31171480 - 31171316
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 197  Q
    |||||| || ||||||||| ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31171480 ttcattcaaaatgtgatttccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31171382  T
Q  198 -tcatc--gatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 260  Q
     |||||    | ||||||||||| | |||||| |||||||||||||| |||||||| |||||||||    
T  31171381 ttcatcattttggtttttcttacaaccaattaccattttcatcttaaaaacatcaatcttcttcat 31171316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 32138961 - 32138880
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatct 289  Q
    |||||||||  |||||||| |||||||||||||||||||||||| ||||||||||||||  |||||||||| || |||||||    
T  32138961 tttttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccatct 32138880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 23944096 - 23944158
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||||||| ||||||||    
T  23944096 cattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctc 23944158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 276
Target Start/End: Complemental strand, 31152919 - 31152738
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgc 197  Q
    |||||| || ||||||| | ||||||||| |||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||  | ||||||  |    
T  31152919 ttcattcaaaatgtgatctccatctcttt-cgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtagac 31152821  T
Q  198 -tcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 276  Q
     |||||  |     |||||| ||| | |||||| |||||||||||||| |||||||| ||||||||| || || |||||||||    
T  31152820 ttcatcattttggttttttcatacaaccaattaccattttcatcttaaaaacatcaatcttcttcatttctttcattcaacat 31152738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 32962455 - 32962393
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||| ||||    
T  32962455 atcaattatcatattcattttaagaaaatcaaactttttcatctcctttattcaacatatgat 32962393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 34891380 - 34891438
Alignment:
Q  223 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||||||||||| |||||||||||||||||||| |||| ||| ||| ||||||||||    
T  34891380 attatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgat 34891438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 290
Target Start/End: Complemental strand, 22593722 - 22593565
Alignment:
Q  136 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag-----tttttctt-actatcaattatc 228  Q
    |||||||||||| |||||||||| ||||||||||| ||||||||| || |   |||||| | ||||||||||      |||||||| || ||||||| ||    
T  22593722 aatcgaatcgtaattgtcattag-ggtaaattacctccaattcattaatgggtaatgtaggtctcatcgataagattttttttctttacaatcaattgtc 22593624  T
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    |||||||||| ||||||||||||   ||||||||  || |||||||||||||| || |||||    
T  22593623 attttcatctcaagaacatcaaa---cttcatctatttcattcaacatgtgatatctatctc 22593565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 27651564 - 27651503
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||||||||| |||||||||||||  || ||||||||| |||||||||||||| ||||||||    
T  27651564 cattttcatctcaagaacatcaaacaact-catctccttcattcaacatgtgatatccatctc 27651503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 263
Target Start/End: Complemental strand, 8900831 - 8900670
Alignment:
Q  105 aacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgct----ca 200  Q
    |||||||||| ||||| | |||| ||| || ||||||||  ||||||| ||||| | ||||||||||| |||||||||| | | |||||| |||    ||    
T  8900831 aacatgtgatctacatttttttttgtttcataatcgaattctacttgttattagggataaattacccc-aattcatcaatggataatgtaggcttcaaca 8900733  T
Q  201 tcgatagtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctc 263  Q
    |   |  |||||||||| || ||||| |||||| |||| ||||||| ||||||||||||||||    
T  8900732 tttttgttttttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctc 8900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 33362436 - 33362347
Alignment:
Q  92 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    |||| ||||||| ||||||||||||||| ||||||| |||| ||||||||||| || ||  ||||||| |||| ||||||| || |||||||    
T  33362436 atctccttcattcaacatgtgatttacaactctttt-gttctaaaatcgaatcatatttaccattaga-gtaacttacccctaactcatcaa 33362347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 33362465 - 33362414
Alignment:
Q  230 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    ||||||| || |||||||||||||| || |||||||| ||||||||||||||    
T  33362465 ttttcattttcagaacatcaaactttttaatctccttcattcaacatgtgat 33362414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 7463864 - 7463902
Alignment:
Q  224 ttatcattttcatcttaagaacatcaaacttcttcatct 262  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  7463864 ttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 8354444 - 8354394
Alignment:
Q  231 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||||| |||||||| |||||||| ||| ||||| ||||||||||||||    
T  8354444 tttcatctcaagaacattaaacttctacatatccttcattcaacatgtgat 8354394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 27651415 - 27651379
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaa 244  Q
    |||||||||| |||||||||||||||||||| |||||    
T  27651415 tttttcttacaatcaattatcattttcatctcaagaa 27651379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 29152402 - 29152350
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 260  Q
    |||||||||| |||| |||  |||||||||| || ||||||||||||||||||    
T  29152402 tttttcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 97 - 281
Target Start/End: Complemental strand, 7113804 - 7113616
Alignment:
Q  97 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccc-caattcatcaaggaaaaatgtat 195  Q
    |||||||||| |||||||||||||||||||| |||||| ||| |||||||| ||| ||| || ||||||||||||| ||||||||||||||||||||||     
T  7113804 cttcatttaagatgtgatttacatctctttt-gttccataattgaatcgtatttgacatcagcggtaaattacccctcaattcatcaaggaaaaatgtag 7113706  T
Q  196 gctcatcg--atag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    | || |||  ||||  ||||| |||| |||||||||||||||||||| ||||| || ||||||||||||||| || ||||||| ||||||    
T  7113705 gttcgtcggtatagtattttttttaccatcaattatcattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtgat 7113616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 293
Target Start/End: Original strand, 40483739 - 40483935
Alignment:
Q  99 tcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-c 197  Q
    ||||| |||||||||| | |||||| || ||||||||||||||||| ||||| ||||| | ||||| |||||| ||||||||||||  | ||  || | |    
T  40483739 tcattcaacatgtgatcttcatctcatt-cgttccaaaatcgaatcatacttatcattgggggtaatttaccctcaattcatcaagagataacataggcc 40483837  T
Q  198 tcatcgatag--tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    ||||||||||  |||||| ||| |||||||  ||  || || | ||||||||| ||||||||||||| ||||| |||||||||||| |||||||||||    
T  40483838 tcatcgataggttttttcgtacaatcaattcccaaatttatatcaagaacatccaacttcttcatcttctttactcaacatgtgatctccatctcatt 40483935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 2243388 - 2243310
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatct 289  Q
    ||||||| || | ||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 293
Target Start/End: Original strand, 973111 - 973196
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    |||||||||| || | |||||||||| |||| || ||||| ||| ||||||||||||||||||||||||||||| | |||||||||    
T  973111 tttttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcatt 973196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 2243335 - 2243249
Alignment:
Q  97 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 185  Q
    ||||||| |||||||||| | ||||| | ||||||| | ||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  2243335 cttcattcaacatgtgatctccatct-tcttcgttctagaatcgaattttacttgtcattagaggtaaatta-ccccaattcatcaagg 2243249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 14138548 - 14138615
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||  ||||||| || |||||||||||    
T  14138548 ttcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgt 14138615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 17739908 - 17740009
Alignment:
Q  84 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    |||||||| ||||||||||||||||||||||||| ||||||  ||||||||| ||||||||| ||||| | ||||| | | |||| | | ||||||||||    
T  17739908 aacttcttcatcttcttcatttaacatgtgattttcatctc-cttcgttccagaatcgaatcctacttattattagggatgaatttcactcaattcatca 17740006  T
Q  183 agg 185  Q
    |||    
T  17740007 agg 17740009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 972845 - 972883
Alignment:
Q  224 ttatcattttcatcttaagaacatcaaacttcttcatct 262  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  972845 ttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 7215371 - 7215322
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 257  Q
    |||||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  7215371 tttttcttacaatcaactaccattttcatctcaagaacatcaaacttctt 7215322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 17736829 - 17736756
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||||||| | |||||| ||||||||||| || || || |||||||||||||| ||| | ||||||||||||    
T  17736829 tttttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgat 17736756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 39808291 - 39808234
Alignment:
Q  224 ttatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||||||||| ||||||| |||||||||| ||||||||||| ||| ||||| ||||    
T  39808291 ttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacatatgat 39808234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 184
Target Start/End: Complemental strand, 7215329 - 7215230
Alignment:
Q  84 aacttcttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    |||||||| ||||||||||| || ||||||| | ||||| ||||| ||| ||||| ||||| || || ||||||  ||||||||||||| |||||| |||    
T  7215329 aacttcttttcttcttcattgaatatgtgatctccatct-ttttcattctaaaattgaatcatatttatcattaacggtaaattaccccgaattcaacaa 7215231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 37077663 - 37077707
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctc 263  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||    
T  37077663 atcagttatcattttcatctcaagaacattaaacttcttcatctc 37077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 39730484 - 39730369
Alignment:
Q  79 cttcgaacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 177  Q
    ||||||||||||| |||| ||||||  || |||| || |||||||| || |||||||||||||||| |||  |||||| || |||||||||||  |||||    
T  39730484 cttcgaacttctttatctccttcatcgaagatgtaatatacatctcgtt-cgttccaaaatcgaattgtatatgtcatgaggggtaaattaccatcaatt 39730386  T
Q  178 catcaaggaaaaatgta 194  Q
    |||  | ||||||||||    
T  39730385 cattcaagaaaaatgta 39730369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 40483703 - 40483766
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    |||||||||| || |||||||||||||||||||||  | |||||||||||||| | |||||||||    
T  40483703 attttcatctaaa-aacatcaaacttcttcatctcactcattcaacatgtgatcttcatctcatt 40483766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 5205578 - 5205532
Alignment:
Q  243 aacatcaaacttcttcatctcctttattcaacatgtgatgtccatct 289  Q
    |||||||||||| || |||||||||||| |||||||||| |||||||    
T  5205578 aacatcaaacttttttatctcctttattaaacatgtgatctccatct 5205532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 26105549 - 26105491
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccat 287  Q
    ||||| |||| ||||||||||||||||| ||||||||| |||  ||||||||| |||||    
T  26105549 atttttatctaaagaacatcaaacttctccatctccttcatttcacatgtgatctccat 26105491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 22780399 - 22780346
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    ||||||||||| || ||||  |||||||||||| ||||| ||||||||||||||    
T  22780399 cattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgat 22780346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 37077760 - 37077833
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||||||| |||| ||| ||||||||||| || ||||||||| ||||| || |  || ||||||||||||||    
T  37077760 tttttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgat 37077833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 39730361 - 39730312
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 277  Q
    ||||||||||| ||||||||||||||| |||||||| || ||| ||||||    
T  39730361 cattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 90 - 290
Target Start/End: Complemental strand, 13712945 - 13712743
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa-ggaaa 188  Q
    |||||| |||||||||||||||||| |||||||||||  ||||||||| | ||| ||| |||||||||| | |||||||||| |||| |||||| |||||    
T  13712945 ttatctccttcatttaacatgtgatctacatctctttg-gttccaaaacctaattgtatttgtcattagggataaattaccctcaatacatcaaaggaaa 13712847  T
Q  189 aatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtcca 286  Q
    | |||| |||    ||||  |||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||| ||||||||||||| | || ||||    
T  13712846 attgtaggcttgctgataaggtttttcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacatctaatctcca 13712747  T
Q  287 tctc 290  Q
    ||||    
T  13712746 tctc 13712743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 293
Target Start/End: Complemental strand, 9050313 - 9050115
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 196  Q
    |||||||||||| ||||||||||||  ||| ||| || ||||||||| |||| ||||||||||||||||||||| ||||||||||||  | |||||  |     
T  9050313 ttcatttaacatttgatttacatcttcttt-gtttcataatcgaatcctactagtcattagaggtaaattaccctcaattcatcaagagataatgttggt 9050215  T
Q  197 ctcatcgat---agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    ||| || ||   | |||||||||| |||| ||| ||||||||| | ||||||| ||||||||||||||||| | ||||||||| |||| |||||||||||    
T  9050214 ctcgtcaatataattttttcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcatt 9050115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 208 - 293
Target Start/End: Original strand, 16576248 - 16576333
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    |||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||    
T  16576248 tttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcatt 16576333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 16863459 - 16863538
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||||| |||| ||| ||||||||||| |||||||||||| |||||||||| |||||||||| ||||||| | ||||||    
T  16863459 ttcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctc 16863538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 38576955 - 38576791
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg- 196  Q
    |||||| |||||||||||| |||||| |||||| ||| |||| |||| || ||||||||||  |||||||| ||||||||||| ||||   |||||| |     
T  38576955 ttcattcaacatgtgatttccatctc-tttcgtaccataatcaaatcatatttgtcattaggagtaaatta-ccccaattcataaaggggtaatgtaggc 38576858  T
Q  197 ctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 260  Q
    ||||||||||    |||||||||| |||| ||| ||||||||||| || |  |||||||||||||||    
T  38576857 ctcatcgataaggttttttcttacaatcagttaccattttcatctcaatataatcaaacttcttcat 38576791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 38577001 - 38576930
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    |||| ||| ||||||||||| |||||||| ||| ||||||||||| || |||||||||||||| ||||||||    
T  38577001 atcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctc 38576930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 38576764 - 38576707
Alignment:
Q  130 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaa 187  Q
    ||||||||||||||| ||||||||||| |||||||||||||  | |||||||||||||    
T  38576764 ttccaaaatcgaatcatacttgtcatttgaggtaaattaccttcgattcatcaaggaa 38576707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 2909844 - 2909892
Alignment:
Q  230 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||||    
T  2909844 ttttcattttaaaaacatcaaacttcttcatctccttcattcaacatgt 2909892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 277
Target Start/End: Original strand, 16576290 - 16576486
Alignment:
Q  84 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    |||||||| |||| ||||||| |||||||||| | | |||| || ||||||| ||||||||| ||||| ||||||| ||||||||| ||| |||||||||    
T  16576290 aacttcttcatctccttcattcaacatgtgatctccttctcatt-cgttccagaatcgaatcatacttatcattaggggtaaattaaccc-aattcatca 16576387  T
Q  183 aggaaaaatgtatgctcatcg-atag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 277  Q
    |||   || ||| || |  || ||||   |||||||||| |||| ||||||||||||| | || |||| ||||| ||||||| ||||| ||| ||||||    
T  16576388 aggggtaacgtaggccccacggatagagttttttcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatg 16576486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 17606665 - 17606618
Alignment:
Q  246 atcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  17606665 atcaaacttgttcatctccttcattcaacatgtgatatccatctcatt 17606618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 9931337 - 9931406
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaatta 168  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||||||||| |||||||  | |||||||||    
T  9931337 ttcattttacatgtgatattcatctctttt-gttccaaaatcgaatcgtatttgtcatgtggggtaaatta 9931406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 28282653 - 28282735
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    ||||||| ||| | || |||||||||||  | ||||||||||||||| |||| ||| |||||| ||||||| |||||||||||    
T  28282653 ttcttacaatcgaataccattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatctcatt 28282735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 35370402 - 35370483
Alignment:
Q  212 tcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    |||||| |||| ||| |||||| |||| ||||| | ||||||||||| ||||||| ||||||||||| ||  ||||||||||    
T  35370402 tcttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacatgtaatacccatctcatt 35370483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 25606423 - 25606506
Alignment:
Q  98 ttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    |||||| ||||| |||| |||||||| || ||||||| || |||||| ||||||| ||||  |||||||||||| ||||||||||    
T  25606423 ttcattcaacatatgatatacatctcctt-cgttccataaacgaatcctacttgttattaagggtaaattaccctcaattcatca 25606506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 34176654 - 34176697
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatct 262  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||    
T  34176654 atcagttaccattttcatcttaagaatatcaaacttcttcatct 34176697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 25606366 - 25606448
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||||||||  |||| ||||||||||| ||  ||||||||||| ||||||||||  || ||||||||| |||| | ||||||    
T  25606366 tttttcttacactcaaatatcattttcaactccagaacatcaaaattcttcatctgtttcattcaacatatgatatacatctc 25606448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 35371111 - 35371193
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||| |||| |||| ||| ||||||||| | ||||||||||||||||||  |  |||| ||| |||||||||| ||||||||    
T  35371111 ttttttttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctc 35371193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 28282699 - 28282791
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    |||||| ||||||| || ||||||| | |||||| || ||||||| |||| |||  ||||||| ||||| |||||||||||  |||||||||||    
T  28282699 ttatctgcttcattcaatatgtgatctccatctcatt-cgttccataatcaaattttacttgttattaggggtaaattaccgtcaattcatcaa 28282791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 2248991 - 2248931
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatc 288  Q
    ||||||||||| || ||||| |||||||||||||| ||| ||| |||||||| | ||||||    
T  2248991 cattttcatctcaaaaacattaaacttcttcatcttcttaattgaacatgtggtctccatc 2248931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 28282824 - 28282876
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 260  Q
    |||||||||| ||||||||||||||||||||  | || ||||||||| |||||    
T  28282824 tttttcttacaatcaattatcattttcatctccataatatcaaactttttcat 28282876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 35373728 - 35373780
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||||||| |||||| |||||||||||| |  |||| ||||||||||||||    
T  35373728 attttcatctcaagaacgtcaaacttcttctttaccttcattcaacatgtgat 35373780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 90 - 266
Target Start/End: Complemental strand, 25234393 - 25234217
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaa 189  Q
    |||||| ||||||||||  ||||||||| | |||||  |||||||||||||||||||| ||||||| || ||||||||||||  ||||||||||||||||    
T  25234393 ttatctccttcatttaaggtgtgatttatacctctta-cgttccaaaatcgaatcgtatttgtcatgagcggtaaattacccgtaattcatcaaggaaaa 25234295  T
Q  190 atgtatgctcatcgata-gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 266  Q
    ||||| |||||| |||| | ||||||||  |||| ||| ||||||||||| |||||||||||| ||||| || |||||    
T  25234294 atgtaggctcattgatatggttttcttagcatcagttaccattttcatctcaagaacatcaaatttcttaatatcctt 25234217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 262
Target Start/End: Original strand, 25062361 - 25062544
Alignment:
Q  84 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    |||||||| |||| ||||||| |||||||||| | |||||| ||| |||||| |||| |||| ||||||| ||||| |||||||||||| ||||||||||    
T  25062361 aacttcttcatctgcttcattaaacatgtgatcttcatctccttt-gttccataatcaaatcctacttgttattaggggtaaattaccctcaattcatca 25062459  T
Q  183 aggaaaaatgtatgc-tcatcgat----agtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatct 262  Q
    ||||| |||||| || ||| | ||      |||||||||| |||||||| | ||||||||| ||||| |||||||||||||||||    
T  25062460 aggaataatgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatct 25062544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 281
Target Start/End: Complemental strand, 15131698 - 15131577
Alignment:
Q  163 aaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttca 259  Q
    |||||||||  ||||||||||| |  |||||| |||||||||||    ||||||||||||||| ||| |||||| |||| |||||||||||| |||||||    
T  15131698 aaattacccttaattcatcaagaattaatgtaggctcatcgatatggttttttcttactatcagttaccatttttatctcaagaacatcaaatttcttca 15131599  T
Q  260 tctcctttattcaacatgtgat 281  Q
    ||||||| ||||| ||||||||    
T  15131598 tctccttcattcagcatgtgat 15131577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 54000199 - 54000043
Alignment:
Q  134 aaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcat 230  Q
    |||||||||||||| ||||||| |   ||||||||| | || ||||| ||  |||||||||   |||||||||    ||||||||||||||||||| |||    
T  54000199 aaaatcgaatcgtatttgtcatgacgagtaaattacactcagttcataaaaaaaaaatgtagattcatcgatatggttttttcttactatcaattaccat 54000100  T
Q  231 tttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccat 287  Q
    |||||||| ||||||||||||    |||||| | ||||||||||||||||| |||||    
T  54000099 tttcatctcaagaacatcaaaaaaattcatcacatttattcaacatgtgatctccat 54000043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 22050851 - 22050937
Alignment:
Q  207 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    ||||||||||| || | |||||||||| ||||||| ||||  ||  |||||||||||||| |||||||||||||| | |||||||||    
T  22050851 gtttttcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtgatcttcatctcatt 22050937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 20512891 - 20512823
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccat 287  Q
    ||||||| ||||||||||||||  |||||||||||||||||||| ||| ||| ||||||| || |||||    
T  20512891 atcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgtaatctccat 20512823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 4115452 - 4115389
Alignment:
Q  214 ttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 277  Q
    ||||||| ||||| |||||| ||||||||||||| |||||||| |||||| || ||||||||||    
T  4115452 ttactattaattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatg 4115389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 25062340 - 25062401
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||| ||||| |||||||||||||||||||||| ||| ||| |||||||||| | ||||||    
T  25062340 atttttatcttcagaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctc 25062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 54000275 - 54000218
Alignment:
Q  224 ttatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||||||| ||||||| ||||||||||||||| |||||||| ||| || |||||||    
T  54000275 ttatcatttttatcttaaaaacatcaaacttctttatctccttcatttaagatgtgat 54000218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 55897600 - 55897693
Alignment:
Q  90 ttatcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    ||||||| |||||| ||||| |||| | |||||||||||||||||||||  |||  ||||||| ||||  |||||| || || |||||||||||    
T  55897600 ttatcttattcattcaacatatgatcttcatctcttttcgttccaaaattaaattctacttgttattaagggtaaactatcctcaattcatcaa 55897693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 11020144 - 11020074
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    |||| |||||||||||||||||| || ||||||| | || |||||||||||| |||||||||| | ||||||    
T  11020144 atcagttatcattttcatcttaaaaatatcaaacct-tttatctcctttatttaacatgtgatttgcatctc 11020074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 22050903 - 22050995
Alignment:
Q  92 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 185  Q
    |||| ||||||| |||||||||| | |||||| || | ||| | ||||||||| || || ||||||  ||||||||||||||||||||| ||||    
T  22050903 atctccttcattcaacatgtgatcttcatctcattcctttc-agaatcgaatcatatttatcattaagggtaaattacccccaattcataaagg 22050995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 22050719 - 22050775
Alignment:
Q  230 ttttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtcca 286  Q
    |||| |||| || |||||||||||||||||| ||||| ||| |||||||||| ||||    
T  22050719 ttttaatctcaacaacatcaaacttcttcatttccttcatttaacatgtgatctcca 22050775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 287
Target Start/End: Original strand, 39341110 - 39341278
Alignment:
Q  122 tcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttact 218  Q
    ||||| ||||| ||| ||||||| || || || | || ||||||||| || ||||| ||||||||||||| |||||||| |||||    |||||||||||    
T  39341110 tctttacgttctaaagtcgaatcatatttatcgtgaggggtaaattatcctcaattaatcaaggaaaaatatatgctcaccgatataattttttcttact 39341209  T
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccat 287  Q
    || | ||| ||||||||||||||||| ||||||||| ||||||||||| |||||||||| ||| |||||    
T  39341210 atgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccat 39341278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 281
Target Start/End: Complemental strand, 42091951 - 42091793
Alignment:
Q  125 tttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatagtttttc-ttactatca 222  Q
    |||||||||| |||| | || ||||||| ||||| ||||||||||||||||||| ||||||   | |||||| |||| | ||  |||||| |||| || |    
T  42091951 tttcgttccataatcaagtcttacttgtgattaggggtaaattacccccaattcgtcaaggggtattgtatgtctcaccaatgctttttccttacaatta 42091852  T
Q  223 attatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||||||||||||| || |||||||||||| |||||||| || ||| ||||||||||    
T  42091851 attatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 46303371 - 46303449
Alignment:
Q  209 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccat 287  Q
    ||||||||| ||||| ||||||||| ||||  ||| |||||||||||||||||| |||||||||||||||||| |||||    
T  46303371 ttttcttacaatcaaatatcatttttatctatagagcatcaaacttcttcatcttctttattcaacatgtgatctccat 46303449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 293
Target Start/End: Complemental strand, 34762028 - 34761943
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    |||||||| | ||||||||||||||||||||  |||| ||||||| | || |||||||| | |||||||||||| | |||||||||    
T  34762028 tttttctttcaatcaattatcattttcatctcgagaatatcaaacctttttatctccttcactcaacatgtgatcttcatctcatt 34761943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 20519351 - 20519289
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||||||||| |||||| ||||| ||||||||||| || ||| |||||||||| ||||||||    
T  20519351 cattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctc 20519289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 54437848 - 54437949
Alignment:
Q  84 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    |||||||| |||||| |||||||||| ||| ||| ||||| ||||| ||  |||||| |||| || || ||||||||||||||||||||| |||||| ||    
T  54437848 aacttcttcatcttcctcatttaacacgtggtttccatct-ttttcattttaaaatcaaatcatatttatcattagaggtaaattacccctaattcaaca 54437946  T
Q  183 agg 185  Q
    |||    
T  54437947 agg 54437949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 31758242 - 31758298
Alignment:
Q  207 gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcc 264  Q
    ||||||||||| |||||||| |||||||||||||| || |||||||||||| ||||||    
T  31758242 gtttttcttacaatcaattaccattttcatcttaa-aatatcaaacttcttaatctcc 31758298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 39341283 - 39341340
Alignment:
Q  126 ttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaa 183  Q
    ||||||| ||||| ||||| || || ||||||||||||||||||||| ||||||||||    
T  39341283 ttcgttctaaaattgaatcttatttatcattagaggtaaattacccctaattcatcaa 39341340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 48646423 - 48646496
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    |||||| | ||||||||||||||||||||||||||| ||||| | ||| ||||||||| || | || ||||||||    
T  48646423 atcaatgaccattttcatcttaagaacatcaaactt-ttcatattcttcattcaacatatggtctctatctcatt 48646496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 54437806 - 54437860
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatct 262  Q
    |||||||||| |||| ||| |||||| |||| || ||||||||||||||||||||    
T  54437806 tttttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatct 54437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 54437651 - 54437707
Alignment:
Q  222 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    ||||| ||||||||||| || ||||| |||||||||||| ||||| ||| |||||||    
T  54437651 aattaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgt 54437707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 34601516 - 34601435
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatct 289  Q
    |||||| ||| ||||||||  | ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  34601516 tttttcctacaatcaattacaacttttatcttaagaacatcaaacttcctcatctcctttattcaacatgtgatttccatct 34601435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 46080971 - 46081041
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||| | |||||||||    
T  46080971 tttttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgt 46081041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 10775163 - 10775231
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacat 276  Q
    |||||||||  |||||||| |||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  10775163 tttttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacat 10775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 7997314 - 7997185
Alignment:
Q  161 gtaaattacccccaattcatcaaggaaaaatgtatgctcatcgatag---tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt 257  Q
    |||||||||||| ||||||||||| |||||||||   |||||||||    ||||||||| ||||||||| |||||||||||  | || ||| ||||||||    
T  7997314 gtaaattaccccaaattcatcaagaaaaaatgtagattcatcgatatgattttttcttagtatcaattaccattttcatctctataatatctaacttctt 7997215  T
Q  258 catctcctttattcaacatgtgatgtccat 287  Q
    ||| || || ||||||||||| || |||||    
T  7997214 catttctttcattcaacatgtcatatccat 7997185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 52432672 - 52432742
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatct 289  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||| ||| |||| ||||| |||||||    
T  52432672 atcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatct 52432742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 24873765 - 24873839
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt-catctcctttattcaacatgtgat 281  Q
    |||||||||| |||||||| ||||||||| ||||||| ||||||||| || ||||||| | ||||||||||||||    
T  24873765 tttttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtgat 24873839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 24874598 - 24874672
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttctt-catctcctttattcaacatgtgat 281  Q
    |||||||||| |||||||| ||||||||| ||||||| ||||||||| || ||||||| | ||||||||||||||    
T  24874598 tttttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtgat 24874672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 44342145 - 44342055
Alignment:
Q  171 cccaattcatcaaggaaaaatgtatgctcatcgata---gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcat 260  Q
    |||||||||||||||||||||||| ||||| |||||    |||||||||||||| |||| ||||||||| | || ||||||||||||||||||    
T  44342145 cccaattcatcaaggaaaaatgtaggctcaccgatatagttttttcttactatc-attaccattttcatatcaa-aacatcaaacttcttcat 44342055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 49897870 - 49897952
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    |||||||||| || ||||| |||||| | || |||||| || ||||||||| ||||||| |||||||||||||| ||||||||    
T  49897870 tttttcttacgattaattaccatttttagctcaagaacgtcgaacttcttcttctccttcattcaacatgtgatctccatctc 49897952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 68097 - 68178
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatct 289  Q
    |||||||||| || | ||| |||||| || | ||||||||| ||||||||||||||||| ||| |||||||||| |||||||    
T  68097 tttttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatct 68178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 3232179 - 3232271
Alignment:
Q  92 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 185  Q
    |||||||||||| ||||||| || | ||||||||| | ||| |  |||||||| ||||| |||||||||||||||| |||| ||||||||||||    
T  3232179 atcttcttcattcaacatgtaatctccatctctttac-ttctagtatcgaatcatacttatcattagaggtaaattgcccctaattcatcaagg 3232271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 7104316 - 7104400
Alignment:
Q  92 atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaatt 177  Q
    |||| ||||||| ||||||| || | ||||||||| |||| || ||||||||| |||||||||||||| |||| ||||||||||||    
T  7104316 atctccttcattcaacatgtaatattcatctcttt-cgtttcagaatcgaatcatacttgtcattagaagtaatttacccccaatt 7104400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 42819621 - 42819674
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatc 261  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||| ||||||    
T  42819621 tttttcttacaatcaattatcattttcatctcaagaacataaaacttattcatc 42819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 12144970 - 12145049
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    |||||||||| ||||||||||||||| |||| || |   ||||||||||||||||| || |||||||||||||| | ||||||    
T  12144970 tttttcttacaatcaattatcatttttatctcaata---tcaaacttcttcatctcattcattcaacatgtgattttcatctc 12145049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 3367806 - 3367864
Alignment:
Q  232 ttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    ||||||| |||||||||||| || |||||||| || |||||||||||||| ||||||||    
T  3367806 ttcatctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatctc 3367864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 49897909 - 49897998
Alignment:
Q  81 tcgaacttcttat-cttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 170  Q
    ||||||||||| | || ||||||| |||||||||| | |||||| ||| |||| | ||||||||| || ||||||||||||||||||||||    
T  49897909 tcgaacttcttcttctccttcattcaacatgtgatctccatctccttt-gttctagaatcgaatcataattgtcattagaggtaaattacc 49897998  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 67982 - 68054
Alignment:
Q  97 cttcatttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacc 170  Q
    |||||||  ||||||||| | ||||||||| | ||||||||||| ||| || ||||||||||||||||||||||    
T  67982 cttcattctacatgtgatcttcatctcttt-cattccaaaatcggatcataattgtcattagaggtaaattacc 68054  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 7749024 - 7749085
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgatgtccatctc 290  Q
    |||||||||| |||||||||||| |||||||| | |||| || |||||||||| ||||||||    
T  7749024 attttcatctcaagaacatcaaatttcttcattttctttgtttaacatgtgatctccatctc 7749085  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 68139 - 68198
Alignment:
Q  84 aacttctt-atcttcttcatttaacatgtgatttacatctcttttcgttccaaaatcgaat 143  Q
    |||||||| |||| |||||||||||||||||| | ||||| ||||||||||||||||||||    
T  68139 aacttcttcatctccttcatttaacatgtgatctccatct-ttttcgttccaaaatcgaat 68198  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 3231979 - 3232031
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||||||| ||||||| ||||||||||||| || || ||||||||||||||    
T  3231979 attttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgat 3232031  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 38839715 - 38839663
Alignment:
Q  229 attttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    |||||||||| ||||||||||||| ||||||||| ||| |||| |||||||||    
T  38839715 attttcatctcaagaacatcaaacctcttcatcttcttcattcgacatgtgat 38839663  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 10775028 - 10775090
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    ||||| ||||||||||||||  ||||||||||| |||||| |||  || ||||||||||||||    
T  10775028 atcaaatatcattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtgat 10775090  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 278
Target Start/End: Original strand, 20068000 - 20068155
Alignment:
Q  126 ttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaaggaaaaatgtatg-ctcatcgatag---tttttcttactatc 221  Q
    ||||||||| ||||||||| |||||||| |||  |||||||||||  ||||||||||| | |||||||| | |||||| ||||   |||||||||| |||    
T  20068000 ttcgttccataatcgaatcctacttgtctttaagggtaaattaccttcaattcatcaaaggaaaatgtaagcctcatccatagtgctttttcttacaatc 20068099  T
Q  222 aattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
     | || ||||||||| |  ||||||||||||||| ||||||| || |||||||||||    
T  20068100 -agtaccattttcatgtagagaacatcaaacttcctcatctctttcattcaacatgt 20068155  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 32342600 - 32342669
Alignment:
Q  208 tttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatg 277  Q
    |||||||||| |||||||||||||||||||| || |||||||||||| |||||||| || ||||||||||    
T  32342600 tttttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatg 32342669  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 23577118 - 23577224
Alignment:
Q  177 tcatcaaggaaaaatgtatgctcatcgata--gtttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaac 274  Q
    |||| ||||||||||||| |||||  ||||  |||||||||| || || ||| ||||||||||| || ||||||| |||||| ||||||||| |||||||    
T  23577118 tcatgaaggaaaaatgtaggctcaatgatatggtttttcttagtaacagttaccattttcatctcaaaaacatcatacttctccatctccttcattcaac 23577217  T
Q  275 atgtgat 281  Q
    || ||||    
T  23577218 atctgat 23577224  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 32047194 - 32047247
Alignment:
Q  228 cattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgtgat 281  Q
    ||||||||||| |||||||||||||||||||||||| || ||||||||| ||||    
T  32047194 cattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgat 32047247  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 20206527 - 20206481
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 257  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  20206527 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 20206481  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 22100550 - 22100504
Alignment:
Q  211 ttcttactatcaattatcattttcatcttaagaacatcaaacttctt 257  Q
    ||||||| |||||||||||||||||||| || |||||||||||||||    
T  22100550 ttcttacaatcaattatcattttcatctcaataacatcaaacttctt 22100504  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 32047262 - 32047317
Alignment:
Q  130 ttccaaaatcgaatcgtacttgtcattagaggtaaattacccccaattcatcaagg 185  Q
    ||||| ||| ||||| ||||| ||||||||||||||||| || |||||||||||||    
T  32047262 ttccataattgaatcctacttatcattagaggtaaattatcctcaattcatcaagg 32047317  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 23577068 - 23577121
Alignment:
Q  101 atttaacatgtgatttacatctcttttcgttccaaaatcgaatcgtacttgtcat 155  Q
    |||||| |||| |||||||||||||||  |||||||||||||||||| |||||||    
T  23577068 atttaagatgttatttacatctctttta-ttccaaaatcgaatcgtatttgtcat 23577121  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 26236797 - 26236751
Alignment:
Q  136 aatcgaatcgtacttgtcattagaggtaaattacccccaattcatca 182  Q
    ||||||||| ||||| | |||||||||||||||||||||||| ||||    
T  26236797 aatcgaatcatacttattattagaggtaaattacccccaatttatca 26236751  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 23577009 - 23577070
Alignment:
Q  209 ttttcttactatcaattatcattttcatcttaagaacatcaaacttcttcatctcctttatt 270  Q
    |||| |||| |||||||||||||||||| |||| ||||| ||| ||||| ||||| ||||||    
T  23577009 tttttttacaatcaattatcattttcattttaaaaacataaaatttctttatctcttttatt 23577070  T

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Target: scaffold0136 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 37033 - 36963
Alignment:
Q  224 ttatcattttcatcttaaga-acatcaaacttcttcatctcctttattcaacatgtgatgtccatctcatt 293  Q
    |||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||||| | |||||||||    
T  37033 ttatcattttcatcttaaaacacatcaaatttcttcatctcgtttattcaacatgtgatcttcatctcatt 36963  T

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Target: scaffold1743 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 794 - 853
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctttattcaacatgt 278  Q
    |||| ||||||||||| | | ||| | ||||||||||||||||||||| |||||||||||    
T  794 atcatttatcattttcctttcaagtatatcaaacttcttcatctccttgattcaacatgt 853  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 62791 - 62744
Alignment:
Q  219 atcaattatcattttcatcttaagaacatcaaacttcttcatctcctt 266  Q
    |||| |||||| ||||||||||| ||||||||||||||| ||||||||    
T  62791 atcagttatcaatttcatcttaaaaacatcaaacttctttatctcctt 62744  T

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