View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7273_low_3 (Length: 291)
Name: NF7273_low_3
Description: NF7273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7273_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 33608946 - 33609206
Alignment:
| Q |
13 |
gcacacacggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagctta |
112 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| |
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| T |
33608946 |
gcacacatggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacaattggttccttcctcatatcggacacacccaacagctta |
33609045 |
T |
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| Q |
113 |
gttgaacgtggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33609046 |
gttgaacgtggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaa |
33609145 |
T |
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| Q |
213 |
tagaacttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcg |
273 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
33609146 |
tagaacttgcaaaatcggttaaccaagagccctttaaaaccatattaaaaagggagtatcg |
33609206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 33618121 - 33618381
Alignment:
| Q |
13 |
gcacacacggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagctta |
112 |
Q |
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||||||| ||||||||||||| || |||||||||||||||||||||||| |||||||| || |||||||||||||| || || ||||| ||| |||| |
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| T |
33618121 |
gcacacatggggatggagactctctcttggacttgcagtggttcctgcagctgtgatgacaatcggttccttcctcattaccgatacaccaaacggcttg |
33618220 |
T |
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| Q |
113 |
gttgaacgtggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaa |
212 |
Q |
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| T |
33618221 |
gtagaacgtggtaagatagagcaagccaaacaagccttacgcaaaattagaggatcctcggttgatattgaacccgagttagaagaacttatcaagtgga |
33618320 |
T |
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| Q |
213 |
tagaacttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcg |
273 |
Q |
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|||| |||| ||||| || | |||||| ||||||||||||||||||||||||||||||| |
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| T |
33618321 |
cagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcg |
33618381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 33627344 - 33627596
Alignment:
| Q |
21 |
ggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagcttagttgaacg |
120 |
Q |
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||||||||||||| || |||||||||||||| || |||||| || || || |||||| ||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
33627344 |
ggggatggagactctctcttggacttgcagttgtgcctgcagctgtaattacaattggtgccttcctcataactgacacacccaacagcttagtcgaacg |
33627443 |
T |
|
| Q |
121 |
tggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaatagaactt |
220 |
Q |
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|||||| | |||||||| |||||||| |||| |||||| |||||||| || ||||||||||||||||||||||||||||||||| ||||| | || || |
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| T |
33627444 |
tggtaagatagagcaagccaaaaaagcattacacaaaatcagaggatcttccattgatattgaacctgagttagaagaacttattaggtcaacaaaaatt |
33627543 |
T |
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| Q |
221 |
gcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcg |
273 |
Q |
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|||||||| | | |||||| |||||||||||||||| |||||||| ||||| |
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| T |
33627544 |
gcaaaatcactgcaacaagagccctttaaaaccatattcaaaagggagtatcg |
33627596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 264
Target Start/End: Original strand, 33622433 - 33622561
Alignment:
| Q |
136 |
agctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaacttattaagtcaatagaacttgcaaaatcggttaac |
235 |
Q |
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|||| ||||||||||||||| ||| | ||||||||| ||||||||||||||||||| ||||||| ||||||||||| | || ||| |||||| || || |
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| T |
33622433 |
agctgaaaaagccttacgcataatcaaaggatcctccattgatattgaacctgagtttgaagaacatattaagtcaacacaaattgtaaaatcagtaaaa |
33622532 |
T |
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| Q |
236 |
caagaggcctttaaaaccatattaaaaag |
264 |
Q |
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|||| |||||||||||||| ||||||| |
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| T |
33622533 |
aaagatccctttaaaaccatactaaaaag |
33622561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 33588238 - 33588418
Alignment:
| Q |
21 |
ggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagcttagttgaacg |
120 |
Q |
| |
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|||| ||| |||| || |||||||| |||||||| |||| | |||||||| |||||| ||||||||||| | |||||||| | |||||| |||||||| |
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| T |
33588238 |
ggggctggcgactctctcttggactagcagtggtgcctgaagccgtgatgacaattggtgccttcctcatatccgacacacccagcagcttggttgaacg |
33588337 |
T |
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| Q |
121 |
tggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaact |
201 |
Q |
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||| || | || ||||| | ||||| || | ||||| |||||||| || ||||| |||| || |||||||||||||| |
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| T |
33588338 |
tggcaagatagaccaagccaggaaagcattgcaaaaaatcagaggatcatccattgatgttgagcccgagttagaagaact |
33588418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 33595410 - 33595590
Alignment:
| Q |
21 |
ggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagcttagttgaacg |
120 |
Q |
| |
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|||| ||| |||| || |||||||| |||||||| |||| | |||||||| |||||| ||||||||||| | |||||||| | |||||| |||||||| |
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| T |
33595410 |
ggggctggcgactctctcttggactagcagtggtgcctggagccgtgatgacaattggtgccttcctcatatccgacacacccagcagcttggttgaacg |
33595509 |
T |
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| Q |
121 |
tggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaact |
201 |
Q |
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||| || | || ||||| | ||||| || | ||||| |||||||| || ||||| |||| || |||||||||||||| |
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| T |
33595510 |
tggcaagatagaccaagccaggaaagcattgcaaaaaatcagaggatcatccattgatgttgagcccgagttagaagaact |
33595590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 201
Target Start/End: Original strand, 33602541 - 33602721
Alignment:
| Q |
21 |
ggggatggagactttcgcttggacttgcagtggttcctgcaatagtgatgacgattggttccttcctcataacggacacaccgaacagcttagttgaacg |
120 |
Q |
| |
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|||| ||| |||| || |||||||| |||||||| |||| | |||||||| |||||| ||||||||||| | |||||||| | |||||| |||||||| |
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| T |
33602541 |
ggggctggcgactctctcttggactagcagtggtgcctggagccgtgatgacaattggtgccttcctcatatccgacacacccagcagcttggttgaacg |
33602640 |
T |
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| Q |
121 |
tggtaaactcgagcaagctaaaaaagccttacgcaaaattagaggatcctcagttgatattgaacctgagttagaagaact |
201 |
Q |
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||| || | || ||||| | ||||| || | ||||| |||||||| || ||||| |||| || |||||||||||||| |
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| T |
33602641 |
tggcaagatagaccaagccaggaaagcattgcaaaaaatcagaggatcatccattgatgttgagcccgagttagaagaact |
33602721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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