View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7274_low_2 (Length: 365)

Name: NF7274_low_2
Description: NF7274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7274_low_2
NF7274_low_2
[»] chr4 (2 HSPs)
chr4 (1-357)||(16988058-16988414)
chr4 (161-256)||(35088802-35088897)
[»] chr2 (3 HSPs)
chr2 (1-357)||(21807540-21807896)
chr2 (12-309)||(20971202-20971497)
chr2 (162-252)||(23682248-23682338)
[»] chr5 (4 HSPs)
chr5 (14-309)||(26465292-26465587)
chr5 (54-250)||(23884074-23884270)
chr5 (167-318)||(23958779-23958930)
chr5 (57-93)||(23958669-23958705)
[»] chr6 (5 HSPs)
chr6 (13-349)||(34068262-34068598)
chr6 (146-271)||(20850027-20850152)
chr6 (144-268)||(14617738-14617862)
chr6 (138-216)||(28561533-28561611)
chr6 (77-318)||(12302377-12302618)
[»] chr7 (5 HSPs)
chr7 (152-252)||(3004921-3005021)
chr7 (134-243)||(8853841-8853950)
chr7 (161-210)||(18477565-18477614)
chr7 (144-208)||(19666209-19666273)
chr7 (152-246)||(19813298-19813392)
[»] chr1 (2 HSPs)
chr1 (152-252)||(37737401-37737501)
chr1 (155-258)||(13427891-13427994)
[»] scaffold0257 (1 HSPs)
scaffold0257 (144-297)||(8273-8426)
[»] chr8 (2 HSPs)
chr8 (74-246)||(18551164-18551336)
chr8 (197-255)||(2998101-2998159)
[»] chr3 (3 HSPs)
chr3 (101-210)||(44667108-44667217)
chr3 (80-303)||(18963220-18963443)
chr3 (305-357)||(4643364-4643416)


Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 16988058 - 16988414
Alignment:
Q  1 tcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988058 tcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatccta 16988157  T
Q  101 gcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttag 200  Q
    || |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988158 gctggaaattctatctctgaatttcaagatattaaagccattatgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttag 16988257  T
Q  201 aggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctac 300  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16988258 aggttgctcattcctcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaggatttttagcttccaaacctgtttctac 16988357  T
Q  301 accatctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 357  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16988358 accatctgacccttcatgcaaattacacactgattctagttctccttatgatgatgt 16988414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 35088802 - 35088897
Alignment:
Q  161 atcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgat 256  Q
    |||||||||||||| ||  | |||||||| |||||| | ||||||||||||||   |  ||| || ||||| ||||||||||||||||| ||||||    
T  35088802 atcaaggatcttggtcaactcaaatacttccttggtattgaggttgctcattccaaagcaggcatttctctctgtcaaagaaagtattgccttgat 35088897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 21807896 - 21807540
Alignment:
Q  1 tcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21807896 tcatcattatgttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacaattttacttgtgtatgttgatgatgtgatccta 21807797  T
Q  101 gcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttag 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21807796 gctggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttag 21807697  T
Q  201 aggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctac 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||    
T  21807696 aggttgctcattcttcacaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactaatacatgatttttagcttccaaacctatttctac 21807597  T
Q  301 accatctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 357  Q
     |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  21807596 gccatctgacccttcctgcaaattacacactgattctagttctccttatgatgatgt 21807540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 309
Target Start/End: Complemental strand, 20971497 - 20971202
Alignment:
Q  12 ttcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattc 111  Q
    |||||||||| |||||||||||||||||||| |||||||| | | ||||||||||||  || ||||| |||||||||||||||||  | |  || | |||    
T  20971497 ttcaatctgcatctgatcactctctcttcattaagaagacagatacttcattcacagccttgcttgtttatgttgatgatgtgattattgttggtacttc 20971398  T
Q  112 tatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcat 211  Q
      | ||||| || || || || |||  || |||||||||||| || ||||| |||| |||||| || || ||||| ||||||||| ||||||||||| ||    
T  20971397 actttctgagtttcaggacatcaaaatcaatctgcattcttccttcaagattaaggctcttggtcaattgaaatattttcttggtctagaggttgcttat 20971298  T
Q  212 tcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctga 309  Q
    || ||| |  | ||||||||||| |||||||| || |||||||| |  |  ||||||||| | ||| | ||||| ||||||| |||||||||||||||    
T  20971297 tcatcacagtgcatctctctttgccaaagaaaataatgtcttgacc--tagactgatacatgttttcttgcttcaaaacctgattctacaccatctga 20971202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 23682248 - 23682338
Alignment:
Q  162 tcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtct 252  Q
    |||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | |||| || ||  | ||||||||||||||||||||    
T  23682248 tcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggtatttcattgtgtcaaagaaagtattgtct 23682338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 26465587 - 26465292
Alignment:
Q  14 caatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattcta 113  Q
    |||||| | |||||||| ||||| ||||| ||||||||   | |||||||||||| ||| ||||| |||||||||||||||||| |  | || | |||      
T  26465587 caatctacatctgatcattctcttttcattaagaagacatatacttcattcacagctttgcttgtttatgttgatgatgtgatcatcactggtacttcac 26465488  T
Q  114 tctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattc 213  Q
    |||||||||||||||| || |||||||||||||||||| ||||  | || |||||||||||||| || |||||||||||||||||||| |||||||||||    
T  26465487 tctctgaattccaagacatcaaagccattctgcattctgctttagaaattaaggatcttggccaattgaaatactttcttggtttagaagttgctcattc 26465388  T
Q  214 ttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctga 309  Q
     ||| |||| ||||||||||| |||||||| ||||||||||||||  ||||||||| | ||||| | ||| | ||||||| |||||||||||||||    
T  26465387 ctcacaaggcatctctctttgccaaagaaaatattgtcttgatctcctaactgatataggatttcttgctgcaaaacctgcttctacaccatctga 26465292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 23884270 - 23884074
Alignment:
Q  54 cttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttc 153  Q
    |||||||||||||| |  | ||||||||||| |||||| | || || |||||||| ||  | | |||||| ||  | || |||| |||||| ||   |||    
T  23884270 cttcttcattcacaatacttcttgtgtatgtggatgatatcattcttgcaggaaactcactttatgaatttcagaacatcaaagacattcttcacaattc 23884171  T
Q  154 ttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgt 250  Q
    ||| || ||||| ||||||||||| |||||||| || |||||||||||||| |||||||||  | |||||||||| || || |||||||||||||||    
T  23884170 tttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggtagctcattctaaacaaggaatctcactatgccaaagaaagtattgt 23884074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 23958779 - 23958930
Alignment:
Q  167 gatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctt-tgtcaaagaaagtattgtcttgatcttttaact 265  Q
    ||||||||||| || |||||||| |||||||||||||||||||| |||||| |||| || | |||| ||||||||||| ||||| ||||||||| | |||    
T  23958779 gatcttggccaattgaaatacttccttggtttagaggttgctcactcttcacaagggat-tttcttatgtcaaagaaaatattgccttgatcttctgact 23958877  T
Q  266 gatacaagatttttagcttccaaacctgtttctacaccatctgacccttcatg 318  Q
    || ||| | ||  | || ||||||||| |||||||||||| ||| || |||||    
T  23958878 gacacatgtttccttgcatccaaacctctttctacaccatttgatccatcatg 23958930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 23958669 - 23958705
Alignment:
Q  57 cttcattcacagttttacttgtgtatgttgatgatgt 93  Q
    ||||||||||||||||||| || ||||||||||||||    
T  23958669 cttcattcacagttttactggtttatgttgatgatgt 23958705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 34068262 - 34068598
Alignment:
Q  13 tcaatctgcttctgatcactctctcttcatcaagaagactgcttcttcattcacagttttacttgtgtatgttgatgatgtgatcctagcaggaaattct 112  Q
    ||||||| |||||||||| ||| | |||| |||||||||  || ||||||| || || ||||| || ||||| |||||||||||  | || ||  | |||    
T  34068262 tcaatctacttctgatcattctttgttcaccaagaagaccactacttcatttactgtgttactagtctatgtggatgatgtgattattgctggtgactct 34068361  T
Q  113 atctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcatt 212  Q
     | |||||| | ||    || ||| ||||| ||||||| |||||||| |||||||| ||||| || || |||||||| ||||| ||||||||||||||||    
T  34068362 ctttctgaacttcactccatcaaatccattttgcattcctcttttaaaatcaaggaccttggtcaattgaaatacttccttggcttagaggttgctcatt 34068461  T
Q  213 cttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttctacaccatctgaccc 312  Q
    ||||  |||| || ||||| ||||| ||||| ||||| |||||| |  ||||||||||  |  || | |||| |||||||||||| || |||||||||||    
T  34068462 cttctgaaggcatttctctatgtcagagaaaatattgccttgatttgctaactgatactggtcttctggcttgcaaacctgtttccactccatctgaccc 34068561  T
Q  313 ttcatgaaaattacacactgattctagttctccttat 349  Q
    ||| || || ||||| | |||||||||| | ||||||    
T  34068562 ttcttgcaagttacataatgattctagtgccccttat 34068598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 20850152 - 20850027
Alignment:
Q  146 cattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagt 245  Q
    |||||||| || || || || |||||||| ||||| || ||||||||||||||| || ||||||| |||||| ||||||| | | | || || |||||||    
T  20850152 cattcttcattcaaaattaaagatcttggtcagttgaagtactttcttggtttaaagtttgctcactcttcacaaggaatatttttgtgccagagaaagt 20850053  T
Q  246 attgtcttgatcttttaactgataca 271  Q
    |||||||||||||| | |||||||||    
T  20850052 attgtcttgatcttctcactgataca 20850027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 268
Target Start/End: Original strand, 14617738 - 14617862
Alignment:
Q  144 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaa 243  Q
    ||||||| ||||| ||||| |||||  | ||||| || ||||| || |||||||||||||||||||| |||||  |||| || || |||| | | |||||    
T  14617738 tgcattcctctttcaagattaaggacttgggccaattgaaataattccttggtttagaggttgctcactcttctcaaggcatttcacttttttagagaaa 14617837  T
Q  244 gtattgtcttgatcttttaactgat 268  Q
    ||||||||| |||||| | ||||||    
T  14617838 gtattgtctggatcttctcactgat 14617862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 28561533 - 28561611
Alignment:
Q  138 ccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttc 216  Q
    |||| ||||||||||| || ||||| || |||||||| ||||| ||||| |||||||| |||||||| || ||||||||    
T  28561533 ccatcctgcattcttccttcaagattaaagatcttggtcagttgaaatattttcttggattagaggtggcacattcttc 28561611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 318
Target Start/End: Original strand, 12302377 - 12302618
Alignment:
Q  77 gtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggcc 176  Q
    ||||||||| ||||| ||||| | || ||  |||| || |||||||| ||| |||| |||||||| || |||||||| || ||||| || ||||||||      
T  12302377 gtgtatgttaatgatatgatcattgctggtgattccatgtctgaatttcaacatatgaaagccatcctacattcttccttcaagattaaagatcttggtt 12302476  T
Q  177 agttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagatt 276  Q
    ||||||| ||||| | |  ||| || ||| | ||||| || |||||||||||  | | |||||| ||||||||  |||||||| | ||||||  | |       
T  12302477 agttaaattacttccatcattttgaagtttcacattcatctaaaggaatctccttgtatcaaaggaagtattgcattgatcttctcactgatctaggtca 12302576  T
Q  277 tttagcttccaaacctgtttctacaccatctgacccttcatg 318  Q
    | |  ||||||||||||||||||| || ||||| ||||||||    
T  12302577 tctgacttccaaacctgtttctactccttctgaaccttcatg 12302618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 3004921 - 3005021
Alignment:
Q  152 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtc 251  Q
    ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | ||||||||||  | |||||||||||||||||||    
T  3004921 tctttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtc 3005020  T
Q  252 t 252  Q
    |    
T  3005021 t 3005021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 8853841 - 8853950
Alignment:
Q  134 aaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctcttt 233  Q
    |||||||||||||| || || ||||| |||||||||||||| || || || || || ||||| |||||| |||||||||||||  ||||||| |||||||    
T  8853841 aaagccattctgcactcctcctttaaaatcaaggatcttggtcaattgaagtatttccttggattagagattgctcattcttctcaaggaatatctcttt 8853940  T
Q  234 gtcaaagaaa 243  Q
    |||| |||||    
T  8853941 gtcagagaaa 8853950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 18477565 - 18477614
Alignment:
Q  161 atcaaggatcttggccagttaaaatactttcttggtttagaggttgctca 210  Q
    |||||||||||||||||||| ||||  |||||||||||||| ||||||||    
T  18477565 atcaaggatcttggccagttgaaattttttcttggtttagaagttgctca 18477614  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 19666209 - 19666273
Alignment:
Q  144 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgct 208  Q
    ||||||| ||||| ||||| |||||  | |||||||| ||||| |||||||||||||||||||||    
T  19666209 tgcattcctctttcaagattaaggacttgggccagttgaaatattttcttggtttagaggttgct 19666273  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 19813392 - 19813298
Alignment:
Q  152 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagta 246  Q
    ||||| || ||||| |||| | |||| ||||||||||| ||||||||||| ||||||||||||  | |||| || || || || |||||||||||    
T  19813392 tctttcaaaatcaaagatcattgccaattaaaatacttccttggtttagaagttgctcattctgaacaagggatttccctatgccaaagaaagta 19813298  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 37737501 - 37737401
Alignment:
Q  152 tcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtc 251  Q
    ||||| || ||||| ||||||||||| |||||||| || ||||||||||||||||||||||||  | ||||||||||  | |||||||||||||||||||    
T  37737501 tctttcaaaatcaaagatcttggccaattaaaatatttccttggtttagaggttgctcattctaaacaaggaatctcattgtgtcaaagaaagtattgtc 37737402  T
Q  252 t 252  Q
    |    
T  37737401 t 37737401  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 13427994 - 13427891
Alignment:
Q  155 tttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttg 254  Q
    |||||||||||||||||||||||| ||||||| ||||||||  ||||||| ||| |||||   || ||||||  | | || |||||||| ||||||||||    
T  13427994 tttaagatcaaggatcttggccagctaaaatattttcttggcatagaggtggcttattctaagaatggaatcagtatatgccaaagaaaatattgtcttg 13427895  T
Q  255 atct 258  Q
    ||||    
T  13427894 atct 13427891  T

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Target: scaffold0257 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 297
Target Start/End: Original strand, 8273 - 8426
Alignment:
Q  144 tgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaa 243  Q
    ||||||| ||||| ||||| |||||  | ||||| || ||||| ||||||||||||||||||||||| |||||  |||| || ||| ||||||| | |||    
T  8273 tgcattcctctttcaagattaaggacttgggccaattgaaatattttcttggtttagaggttgctcactcttctcaaggcatatctgtttgtcagaaaaa 8372  T
Q  244 gtattgtcttgatcttttaactgatacaagatttttagcttccaaacctgtttc 297  Q
     |||||||| |||||  | |||||| || |   ||||||||||||||| |||||    
T  8373 atattgtctggatctcctcactgattcaggtcatttagcttccaaaccagtttc 8426  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 246
Target Start/End: Complemental strand, 18551336 - 18551164
Alignment:
Q  74 cttgtgtatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttg 173  Q
    ||||| ||||| |||||| | |||||||||||||||||  | ||||||||  || | || ||| ||||||| |||   ||||| || ||||| |||||||    
T  18551336 cttgtctatgtagatgatatcatcctagcaggaaattcactttctgaatttgaaaacatcaaaaccattcttcataactctttcaaaatcaaagatcttg 18551237  T
Q  174 gccagttaaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagta 246  Q
    ||||||| ||||| || ||||||||||| || |||||||||  | |||| || ||| | || |||||||||||    
T  18551236 gccagttgaaatatttccttggtttagaagtagctcattctgaacaagggatatctttatgccaaagaaagta 18551164  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 2998101 - 2998159
Alignment:
Q  197 ttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttga 255  Q
    |||||||||||||||||   | |||| |||||| ||| |||||||||||||||||||||    
T  2998101 ttagaggttgctcattccaaagaagggatctctatttctcaaagaaagtattgtcttga 2998159  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 44667217 - 44667108
Alignment:
Q  101 gcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagttaaaatactttcttggtttag 200  Q
    |||||||||||| | ||||| |||||| |||| ||| ||||||||||| |||| || |||||||| ||| | || ||||| || || ||||||||| | |    
T  44667217 gcaggaaattctctttctgagttccaacatatcaaatccattctgcatgcttcattcaagatcaaagatttgggacagttgaactattttcttggtcttg 44667118  T
Q  201 aggttgctca 210  Q
    ||||||||||    
T  44667117 aggttgctca 44667108  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 303
Target Start/End: Complemental strand, 18963443 - 18963220
Alignment:
Q  80 tatgttgatgatgtgatcctagcaggaaattctatctctgaattccaagatattaaagccattctgcattcttcttttaagatcaaggatcttggccagt 179  Q
    |||||||||||||||||  | || || ||  |||| |||||||| ||| |||| || |  || |||||||| || || || || || |||||||| ||||    
T  18963443 tatgttgatgatgtgataattgctggtaacactatgtctgaatttcaacatatcaatgatatcctgcattcgtcattcaaaattaaagatcttggtcagt 18963344  T
Q  180 taaaatactttcttggtttagaggttgctcattcttcaaaaggaatctctctttgtcaaagaaagtattgtcttgatcttttaactgatacaagattttt 279  Q
    | ||||| || ||||||||||| ||||| ||||| ||  ||||||||||| | || ||||| || |||||  |||||||| | | ||||  | |   | |    
T  18963343 tgaaatatttccttggtttagaagttgcacattcatctcaaggaatctctttgtgccaaaggaaatattgcattgatcttcttattgatttaggtcatct 18963244  T
Q  280 agcttccaaacctgtttctacacc 303  Q
    ||||||||||||||||||||||||    
T  18963243 agcttccaaacctgtttctacacc 18963220  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 4643416 - 4643364
Alignment:
Q  305 tctgacccttcatgaaaattacacactgattctagttctccttatgatgatgt 357  Q
    ||||| || ||||| ||| |||||| |||||||||| ||||||||||||||||    
T  4643416 tctgatccatcatgcaaactacacaatgattctagtgctccttatgatgatgt 4643364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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