View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7276_high_5 (Length: 353)
Name: NF7276_high_5
Description: NF7276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7276_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 1605745 - 1606068
Alignment:
| Q |
9 |
cattattcttaatagcttcccttaaactcaagatatgatttacaacgatattgtttatatgaatatgaataannnnnnnnnnnngattatatgaatatga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| |
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| T |
1605745 |
cattattcttaatagcttcccttaaactcaagatatgatttacaacgataatgtttatatgaatatgaataatattttttt---gagtatatgaatatga |
1605841 |
T |
|
| Q |
109 |
aaaagaatatctcttgcagtgtacaaaagaatatgagcatgctcttacaagaattacaatgaacttaattacaaagaattaggtacaataactgaggcaa |
208 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1605842 |
aaaagaatatctctcgcagtgtacaaaagaatatgagcatgctcttacaagaattacaatgaacttaattacaaagaattaagtacaataactgaggcaa |
1605941 |
T |
|
| Q |
209 |
tgaagaaatagctatagcacaacataaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1605942 |
tgaagaaatagctatagcacaacataaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagcaac |
1606041 |
T |
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| Q |
309 |
cgtaaactttgatgcttcctttgggtt |
335 |
Q |
| |
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|||||||||||||||||| || ||||| |
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| T |
1606042 |
cgtaaactttgatgcttcattagggtt |
1606068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 1622865 - 1623190
Alignment:
| Q |
9 |
cattattcttaatagcttcccttaaactcaagatatgatt-tacaacgatattgtttatatgaatatgaataannnnnnnnnnnngattatatgaatatg |
107 |
Q |
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||||||||||||||||| | || |||||||| ||||||| |||||||||| ||||||||||||||||||||| || ||||||| |||| |
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| T |
1622865 |
cattattcttaatagctcctctcaaactcaatgtatgattgtacaacgataatgtttatatgaatatgaataatattttttat--gagtatatgactatg |
1622962 |
T |
|
| Q |
108 |
aaaaagaatatctcttgcagtgtacaaaagaatatgagcatgctcttacaagaattacaatgaacttaattacaaagaattaggtacaataactgaggca |
207 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||| | |
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| T |
1622963 |
aaaaataatatctctcaaagtgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggta |
1623062 |
T |
|
| Q |
208 |
atgaagaaatagctatagcacaacataaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaa |
307 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
1623063 |
gtaaagaaatagctatagcacaacataaatgatcaaagaccagatgtaaatggcacggtagttgtagccaaccatgttggtccagcaaggagtccagcaa |
1623162 |
T |
|
| Q |
308 |
ccgtaaactttgatgcttcctttgggtt |
335 |
Q |
| |
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||||||||||||||||||||||| |||| |
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| T |
1623163 |
ccgtaaactttgatgcttcctttcggtt |
1623190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 157 - 335
Target Start/End: Original strand, 1629186 - 1629366
Alignment:
| Q |
157 |
aagaattacaatgaacttaattacaaagaattaggtacaataactgaggcaatgaagaaata--gctatagcacaacataaatgatcaaagaccagatgt |
254 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||| ||||| ||| |||||||| ||| |||||| || || | ||||||||||||||||||||| |
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| T |
1629186 |
aagaattacaatgaatttaattacaaataactatgtagaataattgaattaatgaagagatatagctataccaaaatacaaatgatcaaagaccagatgt |
1629285 |
T |
|
| Q |
255 |
aaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttgggtt |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1629286 |
aaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagcaaccgtaaactttgatgcttcctttgggtt |
1629366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 234 - 335
Target Start/End: Complemental strand, 10821433 - 10821332
Alignment:
| Q |
234 |
aaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaaccgtaaactttgatgcttcctttggg |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10821433 |
aaatgatcaaagaccagatgtaaatggcacagtagttttagccaaccatgttggaccagcaaggagtccagcaaccgtaaactttgatgcttcctttggg |
10821334 |
T |
|
| Q |
334 |
tt |
335 |
Q |
| |
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|| |
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| T |
10821333 |
tt |
10821332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 335
Target Start/End: Original strand, 18780560 - 18780884
Alignment:
| Q |
9 |
cattattcttaatagcttcccttaaactcaagatatgatt-tacaacgatattgtttatatgaatatgaataannnnnnnnnnnngattatatgaatatg |
107 |
Q |
| |
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|||| ||||||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||||||||||| || |||||||||||| |
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| T |
18780560 |
catttttcttaatagcttccctcaaactcaaggtatgattgtacaacgataatgtttatatgaatatgaataatattttttat--gagtatatgaatatg |
18780657 |
T |
|
| Q |
108 |
aaaaagaatatctcttgcagtgtacaaaagaatatgagcatgctcttacaagaattacaatgaacttaattacaaagaattaggtacaataactgaggca |
207 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||| |
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| T |
18780658 |
aaaa-gaatatctctcgcaatgtacaaaagaatatgggtatgctcttacaagaattacaatgaatttaattacaaagaattaagtacaataattgaagca |
18780756 |
T |
|
| Q |
208 |
atgaagaaatagctatagcacaacataaatgatcaaagaccagatgtaaatggcacagtagttgtagccaaccatgttggtccagcaaggagtccagtaa |
307 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| || |
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| T |
18780757 |
atgaagaaatagctatagcacaacataaaagatcaaagaccagatgtaaatggcacagtagttgtagccagccatgttggtccagtaatgagtccagcaa |
18780856 |
T |
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| Q |
308 |
ccgtaaactttgatgcttcctttgggtt |
335 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
18780857 |
ccgtaaactttgatgcttccttagggtt |
18780884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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