View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7276_high_6 (Length: 323)

Name: NF7276_high_6
Description: NF7276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7276_high_6
NF7276_high_6
[»] chr8 (8 HSPs)
chr8 (141-318)||(32551697-32551874)
chr8 (2-149)||(32551057-32551204)
chr8 (25-96)||(33802345-33802416)
chr8 (25-96)||(38686308-38686379)
chr8 (25-96)||(33801504-33801575)
chr8 (25-96)||(38687027-38687098)
chr8 (35-71)||(36936400-36936436)
chr8 (35-71)||(36936679-36936715)
[»] chr1 (7 HSPs)
chr1 (104-316)||(45581521-45581732)
chr1 (35-96)||(38618235-38618296)
chr1 (53-96)||(50354996-50355039)
chr1 (53-96)||(24976719-24976762)
chr1 (53-96)||(29334947-29334990)
chr1 (35-74)||(37422422-37422461)
chr1 (25-71)||(14925314-14925360)
[»] chr4 (5 HSPs)
chr4 (25-95)||(53664218-53664288)
chr4 (25-96)||(50710389-50710460)
chr4 (25-96)||(53665058-53665129)
chr4 (49-96)||(20681727-20681774)
chr4 (35-63)||(6680324-6680352)
[»] chr2 (9 HSPs)
chr2 (25-96)||(8536858-8536929)
chr2 (25-83)||(8536155-8536213)
chr2 (53-96)||(6851917-6851960)
chr2 (54-96)||(26893487-26893529)
chr2 (54-96)||(26898926-26898968)
chr2 (49-96)||(6852805-6852852)
chr2 (35-96)||(26487827-26487888)
chr2 (35-74)||(19521368-19521407)
chr2 (32-71)||(42370929-42370968)
[»] chr7 (6 HSPs)
chr7 (53-96)||(34852562-34852605)
chr7 (35-71)||(12732277-12732313)
chr7 (53-96)||(30916496-30916539)
chr7 (25-63)||(46757462-46757500)
chr7 (53-95)||(46814247-46814289)
chr7 (53-97)||(5004192-5004236)
[»] chr5 (4 HSPs)
chr5 (35-102)||(7495239-7495306)
chr5 (52-96)||(43589161-43589205)
chr5 (53-96)||(18153434-18153477)
chr5 (53-96)||(42993200-42993243)
[»] chr3 (2 HSPs)
chr3 (53-96)||(35432221-35432264)
chr3 (25-71)||(52399000-52399046)
[»] scaffold0189 (1 HSPs)
scaffold0189 (25-71)||(12831-12877)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 141 - 318
Target Start/End: Original strand, 32551697 - 32551874
Alignment:
Q  141 atacttcttatctctttgcaattccttttgaatcatcaactaaattatttttgtaattagagatcatcattatttcttcctcattttatggtttcgatag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32551697 atacttcttatctctttgcaattccttttgaatcatcaactaaattatttttgtaattagagatcatcattatttcttcctcattttatggtttcgatgg 32551796  T
Q  241 tcactcaactttatagataatgtttttctctacctatataatttatattctattcataagtttgctcttcatttcact 318  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32551797 tcactcaactttatagataaagtttttctctacctctataatttatattctattcataagtttgctcttcatttcact 32551874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 32551057 - 32551204
Alignment:
Q  2 atatttgggttaacagaaatacatctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatgttacc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |    
T  32551057 atatttgggttaacagaaatacatctctagtttatctaatggtcaatatttactttcctatgatgggaaagaattccttctacccaccctaaatgtcatc 32551156  T
Q  102 attgttccaaacctttccactcattttctccatatttagatacttctt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32551157 attgttccaaacctttccactcattttctccatatttagatacttctt 32551204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 33802345 - 33802416
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33802345 tctctattttatttaatggtcaatatttactttcccatggtgggaaagaattccttctacccaccctaaatg 33802416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 38686379 - 38686308
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  38686379 tctctactttatctaatggtcaatatttactttcccatggtggaaaagaattccttctacccaccctaaatg 38686308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 33801575 - 33801504
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  33801575 tctctactttatttaatggtcaatatttacttttccatggtgggaaagaattccttctacccaccctaaatg 33801504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 38687027 - 38687098
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||| ||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  38687027 tctctactttatctaatgatcaatatttactttcccattgtgggaaagaattccttctacccaccctaaatg 38687098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 36936400 - 36936436
Alignment:
Q  35 atctaatggtcaatatttactttcccatgatgggaaa 71  Q
    |||||||||| || |||||||||||||||||||||||    
T  36936400 atctaatggttaaaatttactttcccatgatgggaaa 36936436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 36936679 - 36936715
Alignment:
Q  35 atctaatggtcaatatttactttcccatgatgggaaa 71  Q
    |||||||||| || |||||||||||||||||||||||    
T  36936679 atctaatggttaaaatttactttcccatgatgggaaa 36936715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 104 - 316
Target Start/End: Original strand, 45581521 - 45581732
Alignment:
Q  104 tgttccaaacctttccactcattttctccatatttagatacttcttatctctttgcaattccttttgaatcatcaactaaattatttttgtaattagaga 203  Q
    |||||||||| ||||| ||| ||||||||| |||| ||| |   |||||||||||||| |||||  |||||||||||||| |||  | ||||||||||||    
T  45581521 tgttccaaacttttcctctccttttctccaaattttgatgcccattatctctttgcaaatccttcagaatcatcaactaagttacgtctgtaattagaga 45581620  T
Q  204 tcatcattatttcttcctcattttatggtttcgatagtcactcaactttatagataatgtttttctctacctatataatttatattctattcataa-gtt 302  Q
    | | |||||||||||| |||||||||| |||| ||| |||||||||||||||||||| | |||||||||||  ||||||||||| ||||||||||| | |    
T  45581621 tgaacattatttcttcttcattttatgatttcaataatcactcaactttatagataaaggttttctctacc--tataatttataatctattcataatggt 45581718  T
Q  303 tgctcttcatttca 316  Q
    ||||||||||||||    
T  45581719 tgctcttcatttca 45581732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 38618296 - 38618235
Alignment:
Q  35 atctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||||||||||  || ||||||||||| ||||||||||||||| ||||||||||||||||    
T  38618296 atctaatggtcaaacttaactttcccatggtgggaaagaattcctcctacccaccctaaatg 38618235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 50354996 - 50355039
Alignment:
Q  53 actttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||    
T  50354996 actttcccatggtgggaaagaattcctcctacccaccctaaatg 50355039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 24976719 - 24976762
Alignment:
Q  53 actttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||    
T  24976719 actttcccatggtggaaaagaattcctcctacccaccctaaatg 24976762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 29334947 - 29334990
Alignment:
Q  53 actttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||    
T  29334947 actttcccatggtgggaaataattcctcctacccaccctaaatg 29334990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 37422461 - 37422422
Alignment:
Q  35 atctaatggtcaatatttactttcccatgatgggaaagaa 74  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  37422461 atctaatgataaatatttactttcccatgatgggaaagaa 37422422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 14925314 - 14925360
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaa 71  Q
    ||||||||||||||||||||||| |||  |||||||||| |||||||    
T  14925314 tctctagtttatctaatggtcaaaattagctttcccatggtgggaaa 14925360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 53664288 - 53664218
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaat 95  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53664288 tctctattttatctaatggtcaatatttactttcccatggtgggaaagaattccttctacccaccctaaat 53664218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 50710389 - 50710460
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  50710389 tctctactttatctaatggtcaatatttactttcccatggtgggaaagaattccttctacccaccttaaatg 50710460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 53665058 - 53665129
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||| ||||| ||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||    
T  53665058 tctctactttatttaatggtcaatatttacttttttatggtgggaaagaattccttctacccaccctaaatg 53665129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 20681774 - 20681727
Alignment:
Q  49 atttactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||    
T  20681774 atttactttcccatagtgggaaagaattcctcctacccaccctaaatg 20681727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 6680324 - 6680352
Alignment:
Q  35 atctaatggtcaatatttactttcccatg 63  Q
    |||||||||||||||||||||||||||||    
T  6680324 atctaatggtcaatatttactttcccatg 6680352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 8536858 - 8536929
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||| |||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  8536858 tctctactttatctaatggtcaacatttacttttccatggtaggaaagaattccttctacccaccctaaatg 8536929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 8536213 - 8536155
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaagaattccttcta 83  Q
    |||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  8536213 tctctactttatctaatcgtcaatatttactttcccatggtggaaaagaattccttcta 8536155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 6851960 - 6851917
Alignment:
Q  53 actttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  6851960 actttcccatgatgggaaagaattcctcctacccaccctaaatg 6851917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 26893529 - 26893487
Alignment:
Q  54 ctttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  26893529 ctttcccatggtgggaaagaattccttctacccaccctaaatg 26893487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 26898968 - 26898926
Alignment:
Q  54 ctttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  26898968 ctttcccatggtgggaaagaattccttctacccaccctaaatg 26898926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 6852805 - 6852852
Alignment:
Q  49 atttactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  6852805 atttactttcctatggtgggaaagaattcctcctacccaccctaaatg 6852852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 26487827 - 26487888
Alignment:
Q  35 atctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||||||||||  || |||||| |||| | ||||||||||||| ||||||||||||||||    
T  26487827 atctaatggtcaagcttaactttctcatggtaggaaagaattcctcctacccaccctaaatg 26487888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 19521407 - 19521368
Alignment:
Q  35 atctaatggtcaatatttactttcccatgatgggaaagaa 74  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  19521407 atctaatggttaagatttactttcccatgatgggaaagaa 19521368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 42370929 - 42370968
Alignment:
Q  32 tttatctaatggtcaatatttactttcccatgatgggaaa 71  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  42370929 tttatctaatggccaatatttactttcccatggtgggaaa 42370968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 34852605 - 34852562
Alignment:
Q  53 actttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||    
T  34852605 actttcccatggtggaaaagaattccttctacccaccctaaatg 34852562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 12732313 - 12732277
Alignment:
Q  35 atctaatggtcaatatttactttcccatgatgggaaa 71  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12732313 atctaatggtcaatatttactttcccatggtgggaaa 12732277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 30916496 - 30916539
Alignment:
Q  53 actttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||    
T  30916496 acttttccatgatgggaaagaattcttcctacccaccctaaatg 30916539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 46757500 - 46757462
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatg 63  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  46757500 tctctactttatctaatggtcaatatttactttctcatg 46757462  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 46814247 - 46814289
Alignment:
Q  53 actttcccatgatgggaaagaattccttctacccaccctaaat 95  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||    
T  46814247 actttcccatggtgggaaagaattcctcctacccatcctaaat 46814289  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 5004236 - 5004192
Alignment:
Q  53 actttcccatgatgggaaagaattccttctacccaccctaaatgt 97  Q
    ||||||||||| ||| ||||||||||| ||||||| |||||||||    
T  5004236 actttcccatggtggaaaagaattcctcctacccatcctaaatgt 5004192  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 7495239 - 7495306
Alignment:
Q  35 atctaatggtcaatatttactttcccatgatgggaaagaattccttctacccaccctaaatgttacca 102  Q
    |||||||||||||  || |||||| |||| ||||||||||||||  ||||||||||||||||| ||||    
T  7495239 atctaatggtcaagcttaactttctcatggtgggaaagaattccccctacccaccctaaatgtcacca 7495306  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 43589161 - 43589205
Alignment:
Q  52 tactttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||    
T  43589161 tactttcccatagtgggaaagaattcctcctacccaccctaaatg 43589205  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 18153434 - 18153477
Alignment:
Q  53 actttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||||    
T  18153434 actttcccatggtggaaaagaattcctcctacccaccctaaatg 18153477  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 42993200 - 42993243
Alignment:
Q  53 actttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||    
T  42993200 acttttccatggtgggatagaattccttctacccaccctaaatg 42993243  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 35432221 - 35432264
Alignment:
Q  53 actttcccatgatgggaaagaattccttctacccaccctaaatg 96  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  35432221 acttttccatggtgggaaagaattccttctacccaccctaaatg 35432264  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 52399000 - 52399046
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaa 71  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||    
T  52399000 tctctatttaatctaatggtcaaaatttactttcccatgatgggaaa 52399046  T

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Target: scaffold0189 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 12831 - 12877
Alignment:
Q  25 tctctagtttatctaatggtcaatatttactttcccatgatgggaaa 71  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  12831 tctctagtttatctaatggtcaaaattaactttcccatggtgggaaa 12877  T

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