View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7276_low_1 (Length: 591)
Name: NF7276_low_1
Description: NF7276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7276_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 14 - 572
Target Start/End: Complemental strand, 26537384 - 26536826
Alignment:
| Q |
14 |
agatgaaagccgaaagttaaaacaaaggattggatttaaaaattgtttgatcttcgacacaaagcctactactagtgacggtcggataaatatagttaaa |
113 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26537384 |
agatgaaagccgaaagttaacacaaaggattggatttaaaaattgtttgatcttcgacacaaagcctactactagtgacggtcggataaatatagttaaa |
26537285 |
T |
|
| Q |
114 |
tttcaattgactcgagaaataaaatatcagatttttgctctcaaaccagcaattcaccaggcattcctcaattttgtaccgagtaagatgagcgaggtag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26537284 |
tttcaattgactcgagaaataaaatatcagatttttgctctcaaaccagcaattcaccaggcattcctcaattttgtaccgagtaacatgagcgaggtag |
26537185 |
T |
|
| Q |
214 |
atttctggaacaaatacttcaaagctgaatatctccatagtaccaaaaatgctattgcagcagctgctgaggctgctgaagatgaggatcttgctgnnnn |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26537184 |
atttctggaacaaatacttcaaagctgaatatctccatagtaccaaaaatgctattgcagcagctgctgaggctgctgaagatgaggatcttgctgtttt |
26537085 |
T |
|
| Q |
314 |
nnngaaagatgacgagatattaaaaaatgaagctcgaaagaaggttcgatgggtcgatccaactttagacatggaagcagaccaaggagatgattacact |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26537084 |
tttgaaagatgacgagatattaaaaaatgaagctcgaaagaaggttcgacggattgatccaactttagacatggaagcagaccaaggagatgattacact |
26536985 |
T |
|
| Q |
414 |
catcttccagatcacgggatcttccgtgatggttgcaaggaaacatctgaagctcaaaatactctttatcgaagaacgttgttgcaagatctcaacagac |
513 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26536984 |
catcttcctgaccacgggatcttccgtgatggttgcaaggaaacatctgaagctcaaaatactctttatcgaagaacgttgttgcaagatctcaacagac |
26536885 |
T |
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| Q |
514 |
aaagtgaggtggttcttgaaggaaaaactttagatatagatatggaacatccaagaaca |
572 |
Q |
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| T |
26536884 |
aaagtgaggtggttcttgaaggaaaaactttagatatagatatggaacatccaagaaca |
26536826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 7e-63; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 199 - 358
Target Start/End: Complemental strand, 40351051 - 40350892
Alignment:
| Q |
199 |
agatgagcgaggtagatttctggaacaaatacttcaaagctgaatatctccatagtaccaaaaatgctattgcagcagctgctgaggctgctgaagatga |
298 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40351051 |
agatgagcgaggtagatttctggaacaaatactttaaagctgaatatctccatagtaccaaaaatgctattgcagcagctgccgaggctgctgaagatga |
40350952 |
T |
|
| Q |
299 |
ggatcttgctgnnnnnnngaaagatgacgagatattaaaaaatgaagctcgaaagaaggt |
358 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40350951 |
agatcttgctgtttttttgaaagatgacgagatattagaaaatgaagctcgaaagaaggt |
40350892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 423 - 546
Target Start/End: Complemental strand, 40349325 - 40349202
Alignment:
| Q |
423 |
gatcacgggatcttccgtgatggttgcaaggaaacatctgaagctcaaaatactctttatcgaagaacgttgttgcaagatctcaacagacaaagtgagg |
522 |
Q |
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||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40349325 |
gatcatgggattttccgtgatggtagcaaggaaacatctgaagctcaaaatactctgtatcggagaacgttgttgcaagatctcaacagacaaagtgagg |
40349226 |
T |
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| Q |
523 |
tggttcttgaaggaaaaactttag |
546 |
Q |
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|||||||||||||||||||||||| |
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| T |
40349225 |
tggttcttgaaggaaaaactttag |
40349202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 40355564 - 40355494
Alignment:
| Q |
14 |
agatgaaagccgaaagttaaaacaaaggattggatttaaaaattgtttgatcttcgacacaaagcctacta |
84 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40355564 |
agatgaaagccgaaagttaaaacaaaggattggatttaaaaattctttgatcttcgacacaaagcctacta |
40355494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 355 - 421
Target Start/End: Complemental strand, 40350800 - 40350734
Alignment:
| Q |
355 |
aggttcgatgggtcgatccaactttagacatggaagcagaccaaggagatgattacactcatcttcc |
421 |
Q |
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| T |
40350800 |
aggttcgacgggtcgatccaactctagacatggaagcagaccaaggagatgattacactcatcttcc |
40350734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 40351224 - 40351165
Alignment:
| Q |
141 |
cagatttttgctctcaaaccagcaattcaccaggcattcctcaattttgtaccgagtaag |
200 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
40351224 |
cagatttttgccctcaaaccagcagttcaccaggcattcctcaattttgtacccagtaag |
40351165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 544 - 572
Target Start/End: Complemental strand, 40348483 - 40348455
Alignment:
| Q |
544 |
tagatatagatatggaacatccaagaaca |
572 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40348483 |
tagatatagatatggaacatccaagaaca |
40348455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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