View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7276_low_2 (Length: 536)
Name: NF7276_low_2
Description: NF7276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7276_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Complemental strand, 2802819 - 2802319
Alignment:
| Q |
17 |
gaacatgttggttgggtgcatttgacattttggtacatcttcctatgcatgttggtgctatacgaaaggtacatcttttcaacatatggatactggatag |
116 |
Q |
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| T |
2802819 |
gaacatgttggttgggtgcatttgacattttggtacatcttcctatgcatgttggtgctatacgaaaggtacatcttttcaacatatggatactggatag |
2802720 |
T |
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| Q |
117 |
tggatactggttgtgtgataaacagtttatgaaatcaagatgtagaaacagatgttcaggcttcagcttatacttaatttgtatgaagggatgttgcatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||||||||||||||||| |
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| T |
2802719 |
tggatactggttgtgtgataaacagtttatgaaatcaagatgtagaaacagatgtt---gcattaacttatacttaatttgtatgaagggatgttgcatt |
2802623 |
T |
|
| Q |
217 |
agaatatcatgtaacacagcaccacagctatcatcagaaattgatttaaactattatccgtgtcattcatttacacaattgagcatagaatacacatatt |
316 |
Q |
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| T |
2802622 |
agaatatcatgtaacacagcaccacaactatcatcagaaattgatttaaactattatccgtgtcattcatttacacaattgagcatagaatacacatatt |
2802523 |
T |
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| Q |
317 |
gaacagttacaacaagaacaaattgataacaaatcattaaacatagttttagttttcagccaaataacttatagctaaattcattttcagtaaatcacaa |
416 |
Q |
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| T |
2802522 |
gaacagttacaacaagaacaaattgataacaaatcattaaacatagttttagttttcagccaaataacttatagctaaattcattttcagtaaatcacaa |
2802423 |
T |
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| Q |
417 |
cctgaaaaagcttaagaatacaaaaagaatatcatattctataagcctggcatagaagatagtaatgattctaatttgaaggatagaaaattatgcctaa |
516 |
Q |
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| T |
2802422 |
cctgaaaaagcttaagaatacaaaaagaatatcatattctataagccgggcatagaagatagtaatgattctaatttgaaggacagaaaattatgcctaa |
2802323 |
T |
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| Q |
517 |
taag |
520 |
Q |
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|||| |
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| T |
2802322 |
taag |
2802319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 225 - 520
Target Start/End: Original strand, 1659000 - 1659292
Alignment:
| Q |
225 |
atgtaacacagcaccacagctatcatcagaaattgatttaaactattatccgtgtcattcatttacacaattgagcatagaatacacatattgaaca--g |
322 |
Q |
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| T |
1659000 |
atgtaacacagcaccacaactatcatcagaaattgatttaaactattatccgtgtcattcatttacacaattgagcatagaatacacatattgaacatag |
1659099 |
T |
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| Q |
323 |
ttacaacaagaacaaattgataacaaatcattaaacatagttttagttttcagccaaataacttatagctaaattcattttcagtaaatcacaacctgaa |
422 |
Q |
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| T |
1659100 |
ttacaacaagaacaaatttataacaaatcattaaacatagttttagttttcagccaaatgacttatagctaaattcattttcagtaaatcacaacctgaa |
1659199 |
T |
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| Q |
423 |
aaagcttaagaatacaaaaagaatatcatattctataagcctggcatagaagatagtaatgattctaatttgaaggatagaaaattatgcctaataag |
520 |
Q |
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| T |
1659200 |
-----taaagaatacaaaaagaatatcatattctataagcctagcatagaagatagtaatgattctaatttgaaggatagaaaattatgcctaataag |
1659292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 1679643 - 1679692
Alignment:
| Q |
121 |
tactggttgtgtgataaacagtttatgaaatcaagatgtagaaacagatg |
170 |
Q |
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| T |
1679643 |
tactggttgtgatataaacagttaatgaaatctagatgtagaaacagatg |
1679692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 2801085 - 2801036
Alignment:
| Q |
121 |
tactggttgtgtgataaacagtttatgaaatcaagatgtagaaacagatg |
170 |
Q |
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| T |
2801085 |
tactggttgtgacataaacagttaatgaaatctagatgtagaaacagatg |
2801036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 1679790 - 1679847
Alignment:
| Q |
244 |
ctatcatcagaaattgatttaaactattatccgtgtcattcatttacacaattgagca |
301 |
Q |
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||||||| ||||||||||||||| |||||||| ||||||| | ||| |||||| |||| |
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| T |
1679790 |
ctatcattagaaattgatttaaattattatccatgtcatttacttatacaatttagca |
1679847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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