View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7276_low_3 (Length: 527)
Name: NF7276_low_3
Description: NF7276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7276_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 338 - 512
Target Start/End: Complemental strand, 1657154 - 1656979
Alignment:
| Q |
338 |
agtactgtgatgagatgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgttt |
437 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1657154 |
agtactgtgatgaggtgctaataagtcgttgcctcgcagctcgatatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgttt |
1657055 |
T |
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| Q |
438 |
gctatgaagtttgaattgtgaatttataatg-tttatgttttcagatttacttctatgagaaattacttttgtttt |
512 |
Q |
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| T |
1657054 |
gctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgtttt |
1656979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 31871988 - 31871940
Alignment:
| Q |
174 |
tatgaaatgggctgctcagatttttgcttttagatttgttgtaaatgta |
222 |
Q |
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| T |
31871988 |
tatgaaatgtgctgctcagatttttgctcttagatttgttgtaaatgta |
31871940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 338 - 502
Target Start/End: Original strand, 28246489 - 28246654
Alignment:
| Q |
338 |
agtactgtgatgagatgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgttt |
437 |
Q |
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| T |
28246489 |
agtactgtgataaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacatcaaggatgtcttgttt |
28246588 |
T |
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| Q |
438 |
gctatgaagtttgaattgtgaatttataatg-tttatgttttcagatttacttctatgagaaatta |
502 |
Q |
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| T |
28246589 |
gctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaatta |
28246654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 11936471 - 11936599
Alignment:
| Q |
338 |
agtactgtgatgagatgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgttt |
437 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11936471 |
agtactgtgataaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgttt |
11936570 |
T |
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| Q |
438 |
gctatgaagtttgaattgtgaatttataa |
466 |
Q |
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| T |
11936571 |
gctatgaagtttgaattgtgaatttataa |
11936599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 338 - 466
Target Start/End: Original strand, 11948451 - 11948579
Alignment:
| Q |
338 |
agtactgtgatgagatgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgttt |
437 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11948451 |
agtactgtgataaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgttt |
11948550 |
T |
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| Q |
438 |
gctatgaagtttgaattgtgaatttataa |
466 |
Q |
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| T |
11948551 |
gctatgaagtttgaattgtgaatttataa |
11948579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 358 - 510
Target Start/End: Complemental strand, 644725 - 644573
Alignment:
| Q |
358 |
ataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaaggatgtcttgtttgctatgaagtttgaattgtg |
457 |
Q |
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| T |
644725 |
ataagtcgttgcctagcaactcggtatcgtttt-aatctcaaagagcggagactcttatcacggcaaggatgtcttgtttgctatgaagtttgaattgtg |
644627 |
T |
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| Q |
458 |
aatttataatgtttat-gttttcagatttacttctatgagaaattacttttgtt |
510 |
Q |
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||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
644626 |
aatttctaatgtttttggttttcagatttacttctatgagaaattacttttgtt |
644573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 437 - 512
Target Start/End: Original strand, 31333325 - 31333401
Alignment:
| Q |
437 |
tgctatgaagtttgaattgtgaatttataatgtttat-gttttcagatttacttctatgagaaattacttttgtttt |
512 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
31333325 |
tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgtttt |
31333401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 437 - 512
Target Start/End: Original strand, 31340055 - 31340131
Alignment:
| Q |
437 |
tgctatgaagtttgaattgtgaatttataatgtttat-gttttcagatttacttctatgagaaattacttttgtttt |
512 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
31340055 |
tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgtttt |
31340131 |
T |
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