View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7276_low_4 (Length: 442)
Name: NF7276_low_4
Description: NF7276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7276_low_4 |
 | |
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| [»] scaffold0428 (1 HSPs) |
| | |
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| [»] scaffold0184 (1 HSPs) |
| | |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 894656 - 895065
Alignment:
| Q |
16 |
ataagcagagctaacaactttacttggaactctaacaacccacaagaatttcttactactcaattctagtccaaatgctaactcattcagttgttcatga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
894656 |
ataagcagagctaacaactttacttggaactctaacaacccacaagaatttcttaccactcaattctagtccaaatgctaactcattgagttgttcatga |
894755 |
T |
|
| Q |
116 |
gaaactgttccaccactcccaaaacatacataaagaacagaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
894756 |
gaaactgttccaccactcccaaaacatacataaagaacagaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaat |
894855 |
T |
|
| Q |
216 |
tagactcatttctgtggaggggtcccactggataaaaacaaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtt |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
894856 |
tagactcatttctgtggaggggtcccactggataaaaacaaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtt |
894955 |
T |
|
| Q |
316 |
tatgataacaccatcaactaatgagaatttttgacacacatcaagaaatgatttgtactctaaacttgatctttcacatagaagtggatcaggaatatct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
894956 |
tatgataacaccatcaactaatgagaatttttgacacacatcaagaaatgatttgtactctaaacttgatctttcacatagaagtggatcaggaatatct |
895055 |
T |
|
| Q |
416 |
ttgatatggt |
425 |
Q |
| |
|
|||||||||| |
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|
| T |
895056 |
ttgatatggt |
895065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 905987 - 905580
Alignment:
| Q |
16 |
ataagcagagctaacaactttacttggaactctaacaacccacaagaatttcttactactcaattctagtccaaatgctaactcattcagttgttcatga |
115 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
905987 |
ataagcagagttaacatctttacttggaactctaacaacccacaagaactttttaccactcaattctaatccaaatgctaactcattcagttgttcatga |
905888 |
T |
|
| Q |
116 |
gaaactgttccaccactcccaaaacatacataaagaacagaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
905887 |
gaaactgttccaccactcccaaaacatacataaagaacagaatttggaggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaat |
905788 |
T |
|
| Q |
216 |
tagactcatttctgtggaggggtcccactggataaaaacaaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtt |
315 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||| || || || ||||||||| |||||||| | |
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|
| T |
905787 |
tagactcatttctaataatgggtcccactggataaacacaaggtttctctttttcttgaagaacccttataacatctggctccaaatcagtgaaagtgct |
905688 |
T |
|
| Q |
316 |
tatgataacaccatcaactaatgagaatttttgacacacatcaagaaatgatttgtactctaaacttgatctttcacatagaagtggatcaggaatatct |
415 |
Q |
| |
|
|| |||| |||||||||||||| || ||||||||| || ||||||||| |||||| | || | |||||||||||||||||| | || ||||||||| |
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|
| T |
905687 |
gattataaaaccatcaactaatgtgagtttttgacaaacttcaagaaatattttgtaatttacatttgatctttcacatagaattatttctggaatatct |
905588 |
T |
|
| Q |
416 |
ttgatatg |
423 |
Q |
| |
|
|||||||| |
|
|
| T |
905587 |
ttgatatg |
905580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 563983 - 564051
Alignment:
| Q |
70 |
actactcaattctagtccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaa |
138 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||| | ||||||| |||||||||||| ||||| |
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|
| T |
563983 |
actactcaattctaaccctaatgctaactcattcatttggttttgagaaattgttccaccactaccaaa |
564051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 34 - 393
Target Start/End: Original strand, 8294626 - 8294982
Alignment:
| Q |
34 |
tttacttggaactctaacaacccacaagaatttcttactactcaattctagtccaaatgctaactcattcagttgttcatgagaaactgttccaccactc |
133 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| | || |||||||||||| ||||| |||||||| || ||||| || ||||| | |||||||||||| |
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|
| T |
8294626 |
tttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccactt |
8294725 |
T |
|
| Q |
134 |
ccaaaacatacataaagaacagaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtgga |
233 |
Q |
| |
|
|||||| | ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||| ||| |||||||| || | |
|
|
| T |
8294726 |
ccaaaagagacaaaaagaacagaacttggttgttgattttccaaccaccttaaacacattga---catgtttgcttcattatttgactcattcctaatca |
8294822 |
T |
|
| Q |
234 |
ggggtcccactggataaaaacaaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaac |
333 |
Q |
| |
|
||||| || ||||||| || |||||||||| | |||||||||| ||||||||| || |||||||||||| ||||||| || || ||||||||||||| |
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|
| T |
8294823 |
taggtccaaccggataaacactaggtttctctctatcttgaagaacccttatgacttccggttccaaatcagtgaaagtattcataataacaccatcaaa |
8294922 |
T |
|
| Q |
334 |
taatgagaatttttgacacacatcaagaaatgatttgtactctaaacttgatctttcaca |
393 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||| |
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|
| T |
8294923 |
caatgataatttttgacacacatcaagaattgatttgtaggcatcacttgatctttcaca |
8294982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 34 - 372
Target Start/End: Complemental strand, 33257129 - 33256794
Alignment:
| Q |
34 |
tttacttggaactctaacaacccacaagaatttcttactactcaattctagtccaaatgctaactcattcagttgttcatgagaaactgttccaccactc |
133 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || | || |||||||||||| ||||| ||||||||||| ||||| || ||||| | |||||||||||| |
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|
| T |
33257129 |
tttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccactt |
33257030 |
T |
|
| Q |
134 |
ccaaaacatacataaagaacagaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtgga |
233 |
Q |
| |
|
||||| | ||| ||| ||||||||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||| ||| ||||||||||| || |
|
|
| T |
33257029 |
ccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactga---catgtttgcttcattatttgactcatttctaatga |
33256933 |
T |
|
| Q |
234 |
ggggtcccactggataaaaacaaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaac |
333 |
Q |
| |
|
||||| || ||| ||| || |||||||||| | |||||||| | ||||| | | || ||||||||| | ||||||| || || ||||||||||||| |
|
|
| T |
33256932 |
taggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactgaaagtattgattataacaccatcaaa |
33256833 |
T |
|
| Q |
334 |
taatgagaatttttgacacacatcaagaaatgatttgta |
372 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||||||| |
|
|
| T |
33256832 |
caatgacgatttttgacacacatcaaggattgatttgta |
33256794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 34 - 372
Target Start/End: Complemental strand, 1247 - 912
Alignment:
| Q |
34 |
tttacttggaactctaacaacccacaagaatttcttactactcaattctagtccaaatgctaactcattcagttgttcatgagaaactgttccaccactc |
133 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || | || |||||||||||| ||||| ||||||||||| ||||| || ||||| | |||||||||||| |
|
|
| T |
1247 |
tttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccactt |
1148 |
T |
|
| Q |
134 |
ccaaaacatacataaagaacagaacttggtggttgattctccaaccaccttaaacacattgaattaatgttatcttcacaattagactcatttctgtgga |
233 |
Q |
| |
|
||||| | ||| ||| ||||||||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||| ||| ||||||||||| || |
|
|
| T |
1147 |
ccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactga---catgtttgcttcattatttgactcatttctaatga |
1051 |
T |
|
| Q |
234 |
ggggtcccactggataaaaacaaggtttctctttttcttgaagaagccttatgacctcaggttccaaatcattgaaagtgtttatgataacaccatcaac |
333 |
Q |
| |
|
||||| || ||| ||| || |||||||||| | |||||||| | ||||| | | || ||||||||| | ||||||| || || ||||||||||||| |
|
|
| T |
1050 |
taggtccaaccggaaaaacactaggtttctctctgtcttgaagtacccttacggcttccagttccaaattactgaaagtattgattataacaccatcaaa |
951 |
T |
|
| Q |
334 |
taatgagaatttttgacacacatcaagaaatgatttgta |
372 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||||||| |
|
|
| T |
950 |
caatgacgatttttgacacacatcaaggattgatttgta |
912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 16490752 - 16490675
Alignment:
| Q |
62 |
aatttcttactactcaattctagtccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaaa |
139 |
Q |
| |
|
||||| |||| ||||||||||| ||| | ||||||||||||| ||| || || |||| |||||||||||| |||||| |
|
|
| T |
16490752 |
aattttttaccactcaattctaacccataagctaactcattcacttgctcttgtgaaagtgttccaccacttccaaaa |
16490675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 46720553 - 46720614
Alignment:
| Q |
294 |
gttccaaatcattgaaagtgtttatgataacaccatcaactaatgagaatttttgacacaca |
355 |
Q |
| |
|
||||||||||| ||||||| || || ||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
46720553 |
gttccaaatcagtgaaagtattcataataacaccatcaaacaatgataattttggacacaca |
46720614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 11881 - 11933
Alignment:
| Q |
86 |
ccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaa |
138 |
Q |
| |
|
||||| ||||||||||| | |||||| ||||||| |||||||||||| ||||| |
|
|
| T |
11881 |
ccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaa |
11933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 60963 - 60911
Alignment:
| Q |
86 |
ccaaatgctaactcattcagttgttcatgagaaactgttccaccactcccaaa |
138 |
Q |
| |
|
||||| ||||||||||| | |||||| ||||||| |||||||||||| ||||| |
|
|
| T |
60963 |
ccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaa |
60911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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