View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7276_low_5 (Length: 381)
Name: NF7276_low_5
Description: NF7276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7276_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 24 - 374
Target Start/End: Original strand, 44409058 - 44409404
Alignment:
| Q |
24 |
atagagagaccaactattaatgttgaatcaacagagttagttgcaagcttaggggataaaagcttggtcaacaagtctgcataatgatgagtagcaggga |
123 |
Q |
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| T |
44409058 |
atagagagaccaactattaatgttgaatcaacagagttagttgcaagcttaggggataaaagcttggtcaacaagtctgcataatgatgagtagcaggga |
44409157 |
T |
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| Q |
124 |
tgtgttgcaccatatataaaagactcttgctgagcactttctttctcccttaggaaaaatatattcaggtccatatatgcttattttgtcgtgtaggact |
223 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44409158 |
tgtgttgcaccata----aaagactcttgctgagcactttctttctcccttaggaaaaatatattcaggtccatatatgcttattttgtcgtgtaggact |
44409253 |
T |
|
| Q |
224 |
aggttatgacacagagcaactgtgctcaaattgtcacaatacaagattaaggtgctaaaaggtatttttgagcccagtcaacaaagattgaagtcagagc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44409254 |
aggttatgacacagagcaactgtgctcaaattgtcacaatacaagattaaggtgctaaaaggtatttttgagcccagtcaacaaagattgaagtcagagc |
44409353 |
T |
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| Q |
324 |
acctcagttgtagtagacctaaccattagggcttgattctttgaccaccaa |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44409354 |
acctcagttgtagtagacctaaccattagggcttgattctttgaccaccaa |
44409404 |
T |
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