View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7277_high_1 (Length: 292)
Name: NF7277_high_1
Description: NF7277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7277_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 46353023 - 46352832
Alignment:
| Q |
1 |
atcatgcttctcaatctttcaaaagtttcaatgttcaatgacttggtcatggaatttgcaatatgcacattagtgttacaatgctgaaaaaccaagtttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46353023 |
atcatgcttctcaatctttcaaaagtttcaatgttcaatgacttggtcatggaatttgcaatatgcacattagtattacaatgctgaaaaaccaagtttc |
46352924 |
T |
|
| Q |
101 |
cttttgtcatgtgatcccttaaaaaatgaagcattatctctatctatttgcttttactatgtgcaataggatatttgactaaattaatggac |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46352923 |
cttttgtcatgtgatcccttaaaaaatgaagcattatctctatgtatttgcttttactatgtgcaataggatattggactaaattaatggac |
46352832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 46352626 - 46352551
Alignment:
| Q |
202 |
attaaccattaagaacattgtattttcctctttgatcctcaggattagcattagtgaatcgagccaaggggtttga |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
46352626 |
attaaccattaagaacattgtattttcctctttgatcctcagtattagcattagtgaatcgagccaaggagtttga |
46352551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University