View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7277_high_3 (Length: 291)
Name: NF7277_high_3
Description: NF7277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7277_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 43765024 - 43764745
Alignment:
| Q |
11 |
catcatcatcgtcgacatcaccttgaattttagccattcacactcgtatcactttttatttttaatttcatacgctaaaaatggctgataaatttgttac |
110 |
Q |
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| T |
43765024 |
catcatcgtcgtcgacatcaccttgaattttagccattcacactcatatcactttttatttttaatttcatacgctaaaaatggctgataaatt-gttac |
43764926 |
T |
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| Q |
111 |
atcaataaaagtggctaacaaaacttcaacaattcttttttataaatctgtatctattgtataagttaactaatattcacacnnnnnnnnnnnnnnnnnn |
210 |
Q |
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| T |
43764925 |
atcaataaaagtggctaacaaaacttcaacaattcttttttataaatctgtatctattgtataagttaactaatattcacacaaaaaatgttaaaacaaa |
43764826 |
T |
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| Q |
211 |
nnngtgacagaattcttgtggcctgactctacaagcaggccacttcaatcagtggcgtactaacataaaatgtacaaatcc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43764825 |
aaagtgacagaattcttgtggcctgactctacaagcaggccacttcaatcagtggcgtactaacataaaatgtacaaatcc |
43764745 |
T |
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