View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7277_high_4 (Length: 244)
Name: NF7277_high_4
Description: NF7277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7277_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 43764723 - 43764489
Alignment:
| Q |
1 |
tgcatctaacatgaatttacctatgaccaaaatcctacttctaagttctagctaagcaccatacttcaannnnnnnnngcaatgctacattgggaatcca |
100 |
Q |
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| T |
43764723 |
tgcatctaacatgaatttacctatgaccaaaatcctacttctaagttctagctaagcaccatacttcaatttttttt-gcaatgctatattgggaatcct |
43764625 |
T |
|
| Q |
101 |
aggccttgatattgaaaactcctttaggactgtttccacttttaccaatcaaagccactaagaaaatgcaaaattcaatgagctttgaattcgagggatt |
200 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43764624 |
aggcctttatattgaaaactcctttaggaatgtttccacttttaccaatcaaagccactaagaaaatgcaaaattcaatgagctttgaattcgagggatt |
43764525 |
T |
|
| Q |
201 |
gtaaatttggaaaccaacaatataatggtgatgatg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
43764524 |
gtaaatttggaaaccaacaatataatggtgatgatg |
43764489 |
T |
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