View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7278_low_2 (Length: 365)
Name: NF7278_low_2
Description: NF7278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7278_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 568653 - 569008
Alignment:
| Q |
1 |
ttttcgttgttgggttggagacttggaaaacagctaccacttgtcaggttcagcggtgggaccacatccatgtcccaccatggtacgtgagtttcagtca |
100 |
Q |
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| T |
568653 |
ttttcgttgttgggttggagacctggaaaacagctaccacttgtcaggttcagcggtgggaccacatccatgtcccaccatggtacgtgagtttcagtca |
568752 |
T |
|
| Q |
101 |
gtgattgggaaagaaacaaggaaacaagcatgggaaaaatggggaggaaaaccagacattattgttgcaagtgttggaacaggttcaaatgctttaggta |
200 |
Q |
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| T |
568753 |
gtgattgggaaagaaacaaggaaacaagcatgggaaaaatggggaggaaaaccagacattattgttgcaagtgttggaacaggttcaaatgctttaggta |
568852 |
T |
|
| Q |
201 |
tgttccatgagtttctatcagacatagatgtgagattgattggagttgaagctgctggtttagggttagaaagtggaaaacattcttccactttggccaa |
300 |
Q |
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| T |
568853 |
tgttccatgagtttctatcagacacagatgtgagattgattggagttgaagctgctggtttagggttagaaagtggaaaacattcttccactttaaccaa |
568952 |
T |
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| Q |
301 |
aggagaaatgggtgtttatcatggtgctatctcctatttattacaagatgatgatg |
356 |
Q |
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| T |
568953 |
aggagaaatgggtgtttatcatggtgctatctcctatttattacaagatggtgatg |
569008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 177
Target Start/End: Original strand, 20172427 - 20172542
Alignment:
| Q |
62 |
ccacatccatgtcccaccatggtacgtgagtttcagtcagtgattgggaaagaaacaaggaaacaagcatgggaaaaatggggaggaaaaccagacatta |
161 |
Q |
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| T |
20172427 |
ccacatccatatcctatgatggtaagagagtttcatgcagtgatagggaaagaaacaagaaagcaagcattggaaaaatggggagggaagccagatattc |
20172526 |
T |
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| Q |
162 |
ttgttgcaagtgttgg |
177 |
Q |
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| T |
20172527 |
tagtagcatgtgttgg |
20172542 |
T |
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