View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7279_high_10 (Length: 245)
Name: NF7279_high_10
Description: NF7279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7279_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 39165224 - 39164999
Alignment:
| Q |
1 |
gatgttgaagaggctgacgacgattctgcaatgcaatttgatctcacgccgctttaccgtgcttgtcatattcatagttgtatgggtatcctagatcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39165224 |
gatgttgaagaggctgacgacgattctgcaatgcaatttgatctcacgccgctttaccgtgcttgtcatattcatagttgtatgggtatcctagatcaat |
39165125 |
T |
|
| Q |
101 |
ttcatgaatactattataagaatagattgttacaattgaattcagatttggagatatcttcttcacagccttttgttgaatcatatcagacacttttagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39165124 |
ttcatgaatactattataagaatagattgttacaattgaattcagatttggagatatcttcttcacagccttttgttgaatcatatcagacacttttagc |
39165025 |
T |
|
| Q |
201 |
tcaaattgcagggtatttcatagtgg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
39165024 |
tcaaattgcagggtatttcatagtgg |
39164999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 19510130 - 19510302
Alignment:
| Q |
37 |
tttgatctcacgccgctttaccgtgcttgtcatattcatagttgtatgggtatcctagatcaatttcatgaatactattataagaatagattgttacaat |
136 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||| || | | || |||| ||| | |||| ||||||||| |||| || |||||||||||| |
|
|
| T |
19510130 |
tttgatctcacacctctttatcgtgcttgtcatattcatgattttctaggaatccgagagaagtttcgtgaatactactatactaacagattgttacaac |
19510229 |
T |
|
| Q |
137 |
tgaattcagatttggagatatcttcttcacagccttttgttgaatcatatcagacacttttagctcaaattgc |
209 |
Q |
| |
|
||||||| || | || |||||||| |||| |||||||||||||| || |||||| |||| ||||||||||| |
|
|
| T |
19510230 |
tgaattccgaccttgaaatatcttcagcacaaccttttgttgaatcttaccagacattttttgctcaaattgc |
19510302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University