View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7279_high_5 (Length: 436)
Name: NF7279_high_5
Description: NF7279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7279_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 25524976 - 25524570
Alignment:
| Q |
18 |
gatagatggaacaggtaacattcctcagtgaaattggttggtgatgcgttgactgattactcataatttaccattcgctcctataattttcatattttat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
25524976 |
gatagatggaacaggtaacattcctcagtgaaattggttgatgatgcgttgactgattactaataatttaccattcgctcctataattttcagattttat |
25524877 |
T |
|
| Q |
118 |
ggtttattaagttttttctgatgttggctccttttctataatatcagcaaggatttcatgtttacacgggtgggattagaagctgccctaaggatttcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25524876 |
ggtttattaagttttttctgatgttggctccttttctataatatcagcaacgatttcatgtttacacgggtgggattagaagctgccctaaggatttcaa |
25524777 |
T |
|
| Q |
218 |
tttttatcatgtatataatacggttgcttgttattacatttgattttgatacaaaggaattgtagctagtagagcttatgaattctccgtataagcaagc |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25524776 |
tttttatcatgtatataatacggttgcttcttattacatttgattttgatacaaaggaattgtagctagtagagcttatgaattctccgtataagcaagc |
25524677 |
T |
|
| Q |
318 |
actctgtttgtatgaaaggtctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatagagctcttttagtactctatgg |
417 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25524676 |
actctgtttgtatgaaaggcctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatagagctcttttagtactctatgg |
25524577 |
T |
|
| Q |
418 |
atatatt |
424 |
Q |
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||||||| |
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| T |
25524576 |
atatatt |
25524570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 25540511 - 25540347
Alignment:
| Q |
18 |
gatagatggaacaggtaacattcctcagtgaaattggttggtgatgcgttgactgattactcataatttaccattcgctcctataattttcatattttat |
117 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||||| |||||||| |||||| |
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| T |
25540511 |
gatagatggaacaagtaacgttcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaa |
25540412 |
T |
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| Q |
118 |
ggtttattaagttttttctgatgttggctccttttctataatatcagcaaggatttcatgtttac |
182 |
Q |
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| T |
25540411 |
gatttattaagttttttatgatgttggctccttttctataatatcagtaaggattttatgcttac |
25540347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 25517122 - 25517251
Alignment:
| Q |
18 |
gatagatggaacaggtaacattcctcagtgaaattggttggtgatgcgttgactgattactcataatttaccattcgctcctataattttcatattttat |
117 |
Q |
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||||||||||| ||||||| ||||||||||||||||| || |||| |||| ||||||||||||| ||||||||||||||||| |||||||| ||||||| |
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| T |
25517122 |
gatagatggaataggtaacgttcctcagtgaaattggctgctgatacgttagctgattactcatattttaccattcgctcctacaattttcaaattttat |
25517221 |
T |
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| Q |
118 |
ggtttattaagttttttctgatgttggctc |
147 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25517222 |
ggtttattaagttttttctgatgttggctc |
25517251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 221 - 396
Target Start/End: Complemental strand, 25540343 - 25540172
Alignment:
| Q |
221 |
ttatcatgtatataatacggttgcttgttattacatttgattttgatacaaaggaattgtagctagtagagcttatgaattctccgtataagcaagcact |
320 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||||||| |||||||||| ||| |||| ||||||| |
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| T |
25540343 |
ttataatgtatataatacggttgtttgttattacatttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtat----aagcact |
25540248 |
T |
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| Q |
321 |
ctgtttgtatgaaaggtctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatag |
396 |
Q |
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|| |||||||||| || || |||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
25540247 |
ctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatag |
25540172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 223 - 366
Target Start/End: Original strand, 25517252 - 25517391
Alignment:
| Q |
223 |
atcatgtatataatacggttgcttgttattacatttgattttgatacaaaggaattgtagctagtagagcttatgaattctccgtataagcaagcactct |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||| |||| ||||||||| |
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| T |
25517252 |
atcatgtatataatacggttgcttgttattacatttgattttgatataaaggatttgtagctagtgcagcttatgaactcttggtat----aagcactct |
25517347 |
T |
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| Q |
323 |
gtttgtatgaaaggtctctttggatttactaattttgggagtat |
366 |
Q |
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|||||||||| || || |||||||| |||| ||||||| |||| |
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| T |
25517348 |
ttttgtatgaagggcctatttggattgactagttttgggcgtat |
25517391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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