View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7279_high_6 (Length: 348)
Name: NF7279_high_6
Description: NF7279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7279_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 25524498 - 25524159
Alignment:
| Q |
1 |
atggattgattttgcctactgcttgttactcaatggagaggttgaaacaacagagagatgatccccacgtttaccttccattatttgtctcatgtgaaga |
100 |
Q |
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| T |
25524498 |
atggattgattttgcctactgcttgttactcaatggagagattgaaacaacagagagatgatccccacgtttaccttccattatttgcctcatgtgatga |
25524399 |
T |
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| Q |
101 |
caacattgatagcacgttttgtgtgtttgtttcgttatgcaccctgctttgaagttaataatgctttttggtgccagtttagttatttgcattgttccca |
200 |
Q |
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| T |
25524398 |
caacattgatagcacgttttgtgtgtttgtttcgttatgcaccctgctttgaagttgataatgctttttggtgccagtttagttatttacattgttccca |
25524299 |
T |
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| Q |
201 |
tgttgttttttctttggccttgtttacgattgttttaagtttctgcatgttgcgttttaagtattagtagcttgtttatgcaagtttagttgttttaaaa |
300 |
Q |
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| T |
25524298 |
tgttgttttttctttggccttgtttacgattgttttaagtttctgcatgttgcgttttaagtattagtagcttgtttatgcaagtttagttgttttaaaa |
25524199 |
T |
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| Q |
301 |
tttgaaaggagtttgcaaaatttgaaacctgattcttctc |
340 |
Q |
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| T |
25524198 |
tttgaaaggagtttgcaaaatttgaaacctgattcttctc |
25524159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 25525864 - 25525775
Alignment:
| Q |
35 |
ggagaggttgaaacaacagagagatgatcccca---cgtttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttg |
121 |
Q |
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| T |
25525864 |
ggagaggttgaaacaatagagagatgatcctcatgtagtttaccttcctttatttgtttcacgtgaagagaagagtgatagcaggttttg |
25525775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 25520178 - 25520133
Alignment:
| Q |
207 |
tttttctttggccttgtttacgattgttttaagtttctgcatgttg |
252 |
Q |
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| T |
25520178 |
tttttcttcggccttgtttatgcttgttttaattttctgcatgttg |
25520133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 25525701 - 25525657
Alignment:
| Q |
207 |
tttttctttggccttgtttacgattgttttaagtttctgcatgtt |
251 |
Q |
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| T |
25525701 |
tttttctttggccttgttcatgcttgttttatgtttctgcatgtt |
25525657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 26929995 - 26930088
Alignment:
| Q |
35 |
ggagaggttgaaacaacagagagatgatccccacg----tttaccttccattatttgtctcatgtgaagacaacattgatagcacgttttgtgt |
124 |
Q |
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| T |
26929995 |
ggagaggttaaaacaacagagagatgatccctaagttaatttaccttactttatttgtctcatgtgaacacatcagtagtagcaggttttgtgt |
26930088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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