View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7279_high_8 (Length: 284)
Name: NF7279_high_8
Description: NF7279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7279_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 40226467 - 40226725
Alignment:
| Q |
20 |
acaataatctctagacatgagacattaaattgaacctctttaacatgaaaatcaataccctttgcnnnnnnnnntgaaaa--tgaatacaatatttgatg |
117 |
Q |
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| T |
40226467 |
acaataatatctagacatgagacattaaattgaacctctttaacatgaaaatcaataccctttgcaaaaaaaaataaaaaaatgaatacaatatttgatg |
40226566 |
T |
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| Q |
118 |
tgaaaccagaaattcagaaccttgcaattgaaaaaagtaattaaataattgggacaatgtggaagattaacattgaagggtaaaaaatttaccagattta |
217 |
Q |
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| T |
40226567 |
tgaaaccagaaattcagaaccttgcaattgaaaaaagtaattaaataattgggacaatgtggaagattaacattgaagggtaaaaaacttaccagattta |
40226666 |
T |
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| Q |
218 |
gaacaaatgttatgatagtccttaatgcttttcttcaatgtgttcttggtgttcttctc |
276 |
Q |
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| T |
40226667 |
gaacaaatgttatgatagtccttaatgcttttcttcaatgtgttcttggtgttcttctc |
40226725 |
T |
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