View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7279_low_1 (Length: 647)

Name: NF7279_low_1
Description: NF7279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7279_low_1
NF7279_low_1
[»] chr7 (18 HSPs)
chr7 (59-628)||(830455-831025)
chr7 (59-628)||(1195635-1196205)
chr7 (316-628)||(818993-819303)
chr7 (335-578)||(8456412-8456658)
chr7 (340-567)||(777886-778117)
chr7 (340-567)||(788567-788798)
chr7 (13-91)||(831014-831092)
chr7 (13-91)||(1196194-1196272)
chr7 (57-118)||(17191512-17191573)
chr7 (162-218)||(8568046-8568102)
chr7 (57-116)||(1375998-1376057)
chr7 (594-628)||(777834-777868)
chr7 (594-628)||(788515-788549)
chr7 (43-103)||(30239230-30239290)
chr7 (159-235)||(524347-524424)
chr7 (43-116)||(9653469-9653542)
chr7 (159-211)||(40849385-40849438)
chr7 (43-91)||(29699159-29699207)
[»] chr5 (9 HSPs)
chr5 (19-112)||(16740039-16740132)
chr5 (159-277)||(42119342-42119461)
chr5 (43-103)||(19764994-19765053)
chr5 (56-91)||(24660317-24660352)
chr5 (159-225)||(7590998-7591064)
chr5 (42-103)||(23274659-23274720)
chr5 (163-276)||(41455404-41455518)
chr5 (43-91)||(27736405-27736453)
chr5 (159-218)||(42920540-42920600)
[»] chr4 (9 HSPs)
chr4 (51-122)||(7311023-7311094)
chr4 (159-241)||(29233316-29233399)
chr4 (158-233)||(20986925-20987001)
chr4 (159-241)||(15986054-15986137)
chr4 (42-92)||(19584854-19584904)
chr4 (43-116)||(13524494-13524567)
chr4 (58-91)||(21070624-21070657)
chr4 (159-203)||(23449496-23449541)
chr4 (159-218)||(8485205-8485265)
[»] chr3 (5 HSPs)
chr3 (42-116)||(8942419-8942493)
chr3 (42-91)||(19305669-19305718)
chr3 (54-91)||(20245671-20245708)
chr3 (43-91)||(7654016-7654064)
chr3 (159-202)||(20039001-20039045)
[»] chr1 (8 HSPs)
chr1 (159-234)||(9961729-9961805)
chr1 (56-116)||(16969125-16969185)
chr1 (159-211)||(17652254-17652307)
chr1 (32-122)||(18748949-18749038)
chr1 (161-218)||(52829317-52829374)
chr1 (43-91)||(17317855-17317903)
chr1 (159-210)||(24630468-24630520)
chr1 (159-234)||(27506992-27507068)
[»] scaffold0204 (1 HSPs)
scaffold0204 (159-241)||(15046-15128)
[»] chr2 (7 HSPs)
chr2 (159-281)||(12041034-12041157)
chr2 (159-239)||(36500101-36500182)
chr2 (52-92)||(23663475-23663515)
chr2 (172-243)||(1331527-1331598)
chr2 (159-241)||(27300975-27301058)
chr2 (163-211)||(7162206-7162254)
chr2 (159-218)||(41166681-41166741)
[»] chr6 (4 HSPs)
chr6 (43-112)||(18564708-18564777)
chr6 (43-103)||(24000950-24001009)
chr6 (44-91)||(25925770-25925817)
chr6 (172-243)||(31944927-31944998)
[»] scaffold0613 (1 HSPs)
scaffold0613 (43-90)||(4877-4923)
[»] scaffold0050 (1 HSPs)
scaffold0050 (42-91)||(78545-78593)
[»] scaffold0035 (1 HSPs)
scaffold0035 (44-108)||(98420-98484)
[»] chr8 (3 HSPs)
chr8 (43-103)||(16648337-16648397)
chr8 (43-91)||(8367424-8367472)
chr8 (59-103)||(18815095-18815139)
[»] scaffold0577 (1 HSPs)
scaffold0577 (43-91)||(1146-1194)


Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 59 - 628
Target Start/End: Complemental strand, 831025 - 830455
Alignment:
Q  59 tgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaaatttgctcttcaacaaatcaaatatgcactaaacatatttcttgta 158  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  831025 tgaatcgattcactcatttagtgaatcgattcattcagttgttttagctcgaaaatttgctcttcaacaaatcaaatatgcactaaacatatttcttgta 830926  T
Q  159 atgcggttgagtgaaaaatgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgatttgcagnnnnnnnatttgatt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| ||||||||       ||||||||    
T  830925 atgcggttgagtgaaaaatgatcctaatacatccaaatcaaatgcgattttttacaatttgagtttggactgattcaatttgcagtttttttatttgatt 830826  T
Q  259 ggttcggttttaaacaccctaatatggagaaatttttgaaattcaatgctttcatactgtgctcgtgtattatccatcttcctttttctatcacatggta 358  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830825 ggttcggttttaaagaccttaatatggagaaatttttgaaattcaatgctttcatactgtgctcgtgtattatccatcttcctttttctatcacatggta 830726  T
Q  359 cacttattctctttaacgtatctctcttccttttccatctatctctcttacacctctcaaataattctaaaatgaagtataagagttgagacgatcatta 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830725 cacttattctctttaacgtatctctcttccttttccatctatctctcttacacctctcaaataattctaaaatgaagtataagagttgagacgatcatta 830626  T
Q  459 tctcctttcctatcaaattctatggttgaaagaccaaatcaaaaact-aatttgcagatagccaagtgtaaatagtgagtggtgagggaatccaagtgct 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  830625 tctcctttcctatcaaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagccaagtgtaaatagtgagtggtgagggaatccaagtgct 830526  T
Q  558 ccctttattctaaggtgtatactagtattgtatttatatattccatatatgctgaccatgcattaattttc 628  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830525 ccctttattctgaggtgtatactagtattgtatttatatattccatatatgctgaccatgcattaattttc 830455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 59 - 628
Target Start/End: Complemental strand, 1196205 - 1195635
Alignment:
Q  59 tgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaaatttgctcttcaacaaatcaaatatgcactaaacatatttcttgta 158  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1196205 tgaatcgattcactcatttagtgaatcgattcattcagttgttttagctcgaaaatttgctcttcaacaaatcaaatatgcactaaacatatttcttgta 1196106  T
Q  159 atgcggttgagtgaaaaatgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgatttgcagnnnnnnnatttgatt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| ||||||||       ||||||||    
T  1196105 atgcggttgagtgaaaaatgatcctaatacatccaaatcaaatgcgattttttacaatttgagtttggactgattcaatttgcagtttttttatttgatt 1196006  T
Q  259 ggttcggttttaaacaccctaatatggagaaatttttgaaattcaatgctttcatactgtgctcgtgtattatccatcttcctttttctatcacatggta 358  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1196005 ggttcggttttaaagaccttaatatggagaaatttttgaaattcaatgctttcatactgtgctcgtgtattatccatcttcctttttctatcacatggta 1195906  T
Q  359 cacttattctctttaacgtatctctcttccttttccatctatctctcttacacctctcaaataattctaaaatgaagtataagagttgagacgatcatta 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1195905 cacttattctctttaacgtatctctcttccttttccatctatctctcttacacctctcaaataattctaaaatgaagtataagagttgagacgatcatta 1195806  T
Q  459 tctcctttcctatcaaattctatggttgaaagaccaaatcaaaaact-aatttgcagatagccaagtgtaaatagtgagtggtgagggaatccaagtgct 557  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1195805 tctcctttcctatcaaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagccaagtgtaaatagtgagtggtgagggaatccaagtgct 1195706  T
Q  558 ccctttattctaaggtgtatactagtattgtatttatatattccatatatgctgaccatgcattaattttc 628  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1195705 ccctttattctgaggtgtatactagtattgtatttatatattccatatatgctgaccatgcattaattttc 1195635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 316 - 628
Target Start/End: Complemental strand, 819303 - 818993
Alignment:
Q  316 tgtgctcgtgtattatccatcttcctttttctatcacatggtacacttattctctttaacgtatctctcttccttttccatctat--ctctcttacacct 413  Q
    ||||||||||||||||||||||| | |||||  ||||||| ||||||||||||  || || | | ||||||||||||||||||||  |||| ||||||||    
T  819303 tgtgctcgtgtattatccatctttccttttccttcacatgctacacttattct--ttcacatctttctcttccttttccatctatacctcttttacacct 819206  T
Q  414 ctcaaataattctaaaatgaagtataagagttgagacgatcattatctcctttcctatcaaattctatggttgaaagaccaaatcaaaaactaa-tttgc 512  Q
    ||||||||||||||| ||||||||||||| || |||| ||||||||||||| ||||||||||||||||||||| |  ||||||||||||||||| ||||     
T  819205 ctcaaataattctaacatgaagtataagaatttagacaatcattatctcctatcctatcaaattctatggttgcat-accaaatcaaaaactaaatttgt 819107  T
Q  513 agatagccaagtgtaaatagtgagtggtgagggaatccaagtgctccctttattctaaggtgtatactagtattgtatttatatattccatatatgctga 612  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||  |||||||||||||||||||    
T  819106 agatagccaagtgtaaaaagtgagtggtgagggaatccaagtgcttcctttattctaaggtgtatactagaactatatt--tatattccatatatgctga 819009  T
Q  613 ccatgcattaattttc 628  Q
    ||||||||||||||||    
T  819008 ccatgcattaattttc 818993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 335 - 578
Target Start/End: Complemental strand, 8456658 - 8456412
Alignment:
Q  335 tcttcctttttctatcacatggtacacttattctctttaacgtatctctcttcctttt-ccatctat--ctctcttacacctctcaaataattctaaaat 431  Q
    |||| ||||||| ||| |||| |||||||||||||||| |||| | |||||||||||| ||||||||  |||||||||||||||||||||||||||||||    
T  8456658 tctttctttttccatcgcatgttacacttattctctttcacgtctttctcttcctttttccatctatacctctcttacacctctcaaataattctaaaat 8456559  T
Q  432 gaagtataagagttgagacgatcattatctcctttcctatcaaattctatggttgaaagaccaaatcaaaaact-aatttgcagatagccaagtgtaaat 530  Q
    ||||||||||| || |||| |||||| |||||| ||||||||||||||||||||| || ||||||||||||||| || ||| |||||||| |||||||||    
T  8456558 gaagtataagaatttagacaatcattgtctcctatcctatcaaattctatggttg-aataccaaatcaaaaactaaaattgtagatagccgagtgtaaat 8456460  T
Q  531 agtgagtggtgagggaatccaagtgctccctttattctaaggtgtata 578  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  8456459 agtgagtggtgagggaatccaagtgctccctttattctaaggcgtata 8456412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 340 - 567
Target Start/End: Complemental strand, 778117 - 777886
Alignment:
Q  340 ctttttctatcacatggtacactt-attctctttaacgtatctctcttccttttccatctat--ctctcttacacctctcaaataattctaaaatgaagt 436  Q
    |||||||||||||||| || | || ||||||||| | || | ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  778117 ctttttctatcacatgttagagttcattctctttcatgtctttctcttccttttccatctatacctcttttacacctctcaaataattctaaaatgaagt 778018  T
Q  437 ataagagttgagacgatcattatctcctttcctatcaaattctatggttgaaagaccaaatcaaaaact-aatttgcagatagccaagtgtaaatagtga 535  Q
    |||||| ||||||| |||||||||||||  |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  778017 ataagaattgagacaatcattatctcctaccctatcgaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagccaagtgtaaaaagtga 777918  T
Q  536 gtggtgagggaatccaagtgctccctttattc 567  Q
    ||||||||||||||||||||||| ||||||||    
T  777917 gtggtgagggaatccaagtgctcactttattc 777886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 340 - 567
Target Start/End: Complemental strand, 788798 - 788567
Alignment:
Q  340 ctttttctatcacatggtacactt-attctctttaacgtatctctcttccttttccatctat--ctctcttacacctctcaaataattctaaaatgaagt 436  Q
    |||||||||||||||| || | || ||||||||| | || | ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  788798 ctttttctatcacatgttagagttcattctctttcatgtctttctcttccttttccatctatacctcttttacacctctcaaataattctaaaatgaagt 788699  T
Q  437 ataagagttgagacgatcattatctcctttcctatcaaattctatggttgaaagaccaaatcaaaaact-aatttgcagatagccaagtgtaaatagtga 535  Q
    |||||| ||||||| |||||||||||||  |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  788698 ataagaattgagacaatcattatctcctaccctatcgaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagccaagtgtaaaaagtga 788599  T
Q  536 gtggtgagggaatccaagtgctccctttattc 567  Q
    ||||||||||||||||||||||| ||||||||    
T  788598 gtggtgagggaatccaagtgctcactttattc 788567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 831092 - 831014
Alignment:
Q  13 aatatgcatgacatttttatctttccagctttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  831092 aatatgcatgccatttttatctttccagctttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 831014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 1196272 - 1196194
Alignment:
Q  13 aatatgcatgacatttttatctttccagctttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1196272 aatatgcatgccatttttatctttccagctttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 1196194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 17191573 - 17191512
Alignment:
Q  57 tctgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaaatttgc 118  Q
    |||||||||||||||||||||| ||||||||||||   ||||||||| || |||||||||||    
T  17191573 tctgaatcgattcactcatttaatgaatcgattcacttagttgtttttgcacgaaaatttgc 17191512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 8568102 - 8568046
Alignment:
Q  162 cggttgagtgaaaaatgatcctaatacatccaaatcaaatgcgattttttacagttt 218  Q
    ||||||||  ||||||||||| ||||||||| || ||||||||||||||||||||||    
T  8568102 cggttgagaaaaaaatgatccgaatacatccgaaccaaatgcgattttttacagttt 8568046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 1375998 - 1376057
Alignment:
Q  57 tctgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaaattt 116  Q
    ||||||||||||||||||||||||||||||||||| || |||| ||| |  |||||||||    
T  1375998 tctgaatcgattcactcatttagtgaatcgattcaccatgttgattttgtgcgaaaattt 1376057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 594 - 628
Target Start/End: Complemental strand, 777868 - 777834
Alignment:
Q  594 tatattccatatatgctgaccatgcattaattttc 628  Q
    |||||||||||||||||||||||||||||||||||    
T  777868 tatattccatatatgctgaccatgcattaattttc 777834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 594 - 628
Target Start/End: Complemental strand, 788549 - 788515
Alignment:
Q  594 tatattccatatatgctgaccatgcattaattttc 628  Q
    |||||||||||||||||||||||||||||||||||    
T  788549 tatattccatatatgctgaccatgcattaattttc 788515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 30239290 - 30239230
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgtttt 103  Q
    ||||| |||||  |||||||||||||||| |||| |||||||||||||| || ||||||||    
T  30239290 ttgtcatttagctgtctgaatcgattcacacattaagtgaatcgattcaccatgttgtttt 30239230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 524424 - 524347
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcg 235  Q
    |||||||||||  ||||| |||||| |||||||||||| ||||| || |||||| |||||| |||||||  |||||||    
T  524424 atgcggttgagcaaaaaagtgatccgaatacatccaaaccaaatacggttttttgcagtttcagtttgggttggttcg 524347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 9653542 - 9653469
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaaattt 116  Q
    |||||||||||   ||||| ||||||||| |||||||||||||||||||   ||||||||| |  |||||||||    
T  9653542 ttgtcttttagctatctgactcgattcacacatttagtgaatcgattcacatagttgtttttggacgaaaattt 9653469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 40849385 - 40849438
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgcgatttttt 211  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||| | ||||||    
T  40849385 atgcggttgagtaaaaaagtgatccgaatacatccaaatcaaatgtggtttttt 40849438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 29699159 - 29699207
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    ||||| |||||| |||||||||||||||| || | ||||||||||||||    
T  29699159 ttgtcatttagttgtctgaatcgattcacacagtaagtgaatcgattca 29699207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 16740132 - 16740039
Alignment:
Q  19 catgacatttttatctttccagctttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaa 112  Q
    ||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||| ||||||| |||||  ||||| ||||||||||||    
T  16740132 catgacattttcacctttccagatttgtcatttagtggtctgaatcgattcactcatttaatgaatcggttcattcagttgatttagctcgaaa 16740039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 42119342 - 42119461
Alignment:
Q  159 atgcggttgagtgaaaaat-gatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgatttgcagnnnnnnnatttgat 257  Q
    |||||||||||| |||||| ||||| ||||||||| |||||||||||||||||| ||||||  ||||| | ||||||| |||||||       ||| |||    
T  42119342 atgcggttgagtaaaaaattgatccgaatacatccgaatcaaatgcgattttttgcagtttcggtttgaattggttcggtttgcagtttttctattggat 42119441  T
Q  258 tggttcggttttaaacaccc 277  Q
    || ||||||||| |||||||    
T  42119442 tgtttcggttttgaacaccc 42119461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 19764994 - 19765053
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgtttt 103  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  19764994 ttgtctttt-gttgtctgaatcgattcactcatttaatgaatcgattcaccaagttgtttt 19765053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 24660317 - 24660352
Alignment:
Q  56 gtctgaatcgattcactcatttagtgaatcgattca 91  Q
    |||||||||||||||| |||||||||||||||||||    
T  24660317 gtctgaatcgattcacacatttagtgaatcgattca 24660352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 7591064 - 7590998
Alignment:
Q  159 atgcggttgagtgaaaaatgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttg 225  Q
    |||| ||||||| |||||||||| ||||||||||||| ||||||   |||||| ||||||| |||||    
T  7591064 atgcagttgagtaaaaaatgatcataatacatccaaaccaaatgtagttttttgcagtttaggtttg 7590998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 23274720 - 23274659
Alignment:
Q  42 tttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgtttt 103  Q
    ||||| ||||||  ||||||||| ||||||  |||||||||||||||||| | |||||||||    
T  23274720 tttgtgttttagctgtctgaatcaattcacctatttagtgaatcgattcacctagttgtttt 23274659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 41455404 - 41455518
Alignment:
Q  163 ggttgagtgaaaaat-gatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgatttgcagnnnnnnnatttgattggt 261  Q
    |||||||| |||||| ||||  ||||||||| || ||||||||||||||| ||||||  ||||||| ||||||   |||| |       |||||||||||    
T  41455404 ggttgagtaaaaaattgatcagaatacatccgaaccaaatgcgattttttgcagtttcggtttggattggttcaggttgcggtttttctatttgattggt 41455503  T
Q  262 tcggttttaaacacc 276  Q
    |||||||| ||||||    
T  41455504 tcggttttgaacacc 41455518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 27736453 - 27736405
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    |||||||||| | ||||||||| |||||  |||||||||||||||||||    
T  27736453 ttgtcttttaattgtctgaatcaattcaaacatttagtgaatcgattca 27736405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 42920600 - 42920540
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgcgattttttacagttt 218  Q
    ||||| |||||| ||||| |||| | ||||||| ||||||||||||||||||||| |||||    
T  42920600 atgcgcttgagtcaaaaagtgattcaaatacattcaaatcaaatgcgattttttaaagttt 42920540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 7311094 - 7311023
Alignment:
Q  51 tagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaaatttgctctt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||| || ||||| |||||||||    
T  7311094 tagtggtctgaatcgattcactcatttagtgaatcgattcatttagttgttttggcacgaaattttgctctt 7311023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 29233316 - 29233399
Alignment:
Q  159 atgcggttgagt-gaaaaatgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgatttgc 241  Q
    |||||||||||| ||||| |||||| |||||||| ||| ||||||||||||||  ||||||  ||||||| |||||||||||||    
T  29233316 atgcggttgagtagaaaattgatccgaatacatctaaaccaaatgcgatttttcgcagtttcggtttggattggttcgatttgc 29233399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 20986925 - 20987001
Alignment:
Q  158 aatgcggttgagtgaaaaat-gatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggtt 233  Q
    ||||||||||||| |||||| ||||| ||||||||| || ||||||||||||||| | ||||  ||||||| |||||    
T  20986925 aatgcggttgagtaaaaaattgatccgaatacatccgaaccaaatgcgattttttgcggtttcggtttggattggtt 20987001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 15986137 - 15986054
Alignment:
Q  159 atgcggttgagtgaaaaat-gatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgatttgc 241  Q
    |||||||||| | |||||| ||||| ||||||||| |||||||||||||||||| | ||||  ||||||| || |||| |||||    
T  15986137 atgcggttgaataaaaaattgatccgaatacatccgaatcaaatgcgattttttgcggtttcggtttggattgattcggtttgc 15986054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 19584904 - 19584854
Alignment:
Q  42 tttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcat 92  Q
    |||||| | ||||||| |||||||||||||||||||  |||||||||||||    
T  19584904 tttgtcatgtagtggtttgaatcgattcactcatttgttgaatcgattcat 19584854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 13524567 - 13524494
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaaattt 116  Q
    |||||||||||   ||||| ||||||||| |||||||||||||||||||   ||||||||| |  |||||||||    
T  13524567 ttgtcttttagctatctgactcgattcacacatttagtgaatcgattcacatagttgtttttggacgaaaattt 13524494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 21070657 - 21070624
Alignment:
Q  58 ctgaatcgattcactcatttagtgaatcgattca 91  Q
    ||||||||||||| ||||||||||||||||||||    
T  21070657 ctgaatcgattcagtcatttagtgaatcgattca 21070624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 23449541 - 23449496
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgc 203  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||    
T  23449541 atgcggttgagtaaaaaaatgatccgaatacatccaaatcaaatgc 23449496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 8485205 - 8485265
Alignment:
Q  159 atgcggttgagtgaa-aaatgatcctaatacatccaaatcaaatgcgattttttacagttt 218  Q
    |||||||||||| || ||||||| | ||||||||| ||||||||||  |||||||||||||    
T  8485205 atgcggttgagtaaataaatgattcgaatacatccgaatcaaatgcagttttttacagttt 8485265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 8942419 - 8942493
Alignment:
Q  42 tttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaaattt 116  Q
    |||||| |||||| || ||||||||||||  ||||||||||||| ||||||  ||||||||||||||||||||||    
T  8942419 tttgtcatttagttgtatgaatcgattcagccatttagtgaatcaattcatacagttgttttagctcgaaaattt 8942493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 19305669 - 19305718
Alignment:
Q  42 tttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    ||||| ||||||  |||||||||||||||| |||| ||||||||||||||    
T  19305669 tttgttttttagctgtctgaatcgattcacacattaagtgaatcgattca 19305718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 20245671 - 20245708
Alignment:
Q  54 tggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  20245671 tggtctgaatcgattcattcatttggtgaatcgattca 20245708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 7654016 - 7654064
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    |||||||||||  || ||||||||||||  |||||||||||||||||||    
T  7654016 ttgtcttttagctgtttgaatcgattcatacatttagtgaatcgattca 7654064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 20039001 - 20039045
Alignment:
Q  159 atgcggttgagtgaaaa-atgatcctaatacatccaaatcaaatg 202  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  20039001 atgcggttgagtaaaaatataatcctaatacatccaaatcaaatg 20039045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 9961805 - 9961729
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttc 234  Q
    |||||||||||| ||||| |||||| |||||||||||| |||||||| |||||| |||||| |||||||| ||||||    
T  9961805 atgcggttgagtaaaaaagtgatccgaatacatccaaaccaaatgcggttttttgcagtttcagtttggattggttc 9961729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 16969125 - 16969185
Alignment:
Q  56 gtctgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaaattt 116  Q
    |||||||||||||||||||||||||||||||||||| || |||||||| |  |||||||||    
T  16969125 gtctgaatcgattcactcatttagtgaatcgattcaccatgttgtttttgtacgaaaattt 16969185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 17652254 - 17652307
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgcgatttttt 211  Q
    |||||||||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  17652254 atgcggttgaggaaaaaagtgatccgaatacatccaaatcaaatgcgatttttt 17652307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 18748949 - 18749038
Alignment:
Q  32 tctttccagctttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaaatttgctctt 122  Q
    ||||||||| ||||||||| ||  |||| ||| ||||||| |||||||||||||||||||   ||||||||| |   ||||||||||||||    
T  18748949 tctttccagttttgtcttt-agctgtctaaattgattcacacatttagtgaatcgattcacatagttgtttttggaagaaaatttgctctt 18749038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 52829317 - 52829374
Alignment:
Q  161 gcggttgagtgaaaaatgatcctaatacatccaaatcaaatgcgattttttacagttt 218  Q
    |||||||||| ||||||||||  ||||||||||||  ||||||| |||||| ||||||    
T  52829317 gcggttgagtaaaaaatgatctgaatacatccaaactaaatgcgtttttttgcagttt 52829374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 17317903 - 17317855
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    |||||||||||  |||||||| ||||||  |||||||||||||||||||    
T  17317903 ttgtcttttagctgtctgaattgattcaagcatttagtgaatcgattca 17317855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 24630468 - 24630520
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgcgattttt 210  Q
    |||||||||||| ||||| |||||| ||||||| ||||| |||||||||||||    
T  24630468 atgcggttgagtaaaaaagtgatccaaatacattcaaattaaatgcgattttt 24630520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 27507068 - 27506992
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttc 234  Q
    |||||||||||| ||||| |||||| ||||||||| || |||||||| ||||||||  |||  ||||||| ||||||    
T  27507068 atgcggttgagtaaaaaaatgatccgaatacatccgaaccaaatgcggttttttacgattttggtttggattggttc 27506992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 15046 - 15128
Alignment:
Q  159 atgcggttgagtgaaaaatgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgatttgc 241  Q
    |||||||||||| |||| |||||  |||||||||||| |||||||| |||||||| |||| |||||||  ||||| |||||||    
T  15046 atgcggttgagtaaaaagtgatctgaatacatccaaaccaaatgcggttttttacggtttcagtttgggttggtttgatttgc 15128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 281
Target Start/End: Complemental strand, 12041157 - 12041034
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgatttgcagnnnnnnnatttgat 257  Q
    |||||||||||| ||||| |||||| |||||||||||| |||||||| |||||||| ||||  ||||||  |||||| |||||| |       ||| |||    
T  12041157 atgcggttgagtaaaaaagtgatccgaatacatccaaaccaaatgcggttttttacggtttcggtttgggttggttcaatttgcggtttatctattggat 12041058  T
Q  258 tggttcggttttaaacaccctaat 281  Q
    |||||| ||||| |||||||||||    
T  12041057 tggttctgttttgaacaccctaat 12041034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 36500182 - 36500101
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgattt 239  Q
    |||||||||||| ||||| |||||| ||||||||||||  |||||| ||||||||| ||||   ||||| ||||||||||||    
T  36500182 atgcggttgagtaaaaaaatgatccgaatacatccaaacaaaatgcaattttttacggtttcgatttgggctggttcgattt 36500101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 23663515 - 23663475
Alignment:
Q  52 agtggtctgaatcgattcactcatttagtgaatcgattcat 92  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  23663515 agtggtttgaatcgattcattcatttagtgaatcgattcat 23663475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 1331527 - 1331598
Alignment:
Q  172 aaaaatgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgatttgcag 243  Q
    |||| |||||| ||||||||||||||||||||| |||||| |  ||| ||||| |  |||||||||||||||    
T  1331527 aaaagtgatccgaatacatccaaatcaaatgcggttttttgcgatttcagtttaggttggttcgatttgcag 1331598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 27301058 - 27300975
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgatttgc 241  Q
    |||||||||||  ||||| |||||| ||||||||||||||||||||| |||||| | ||||   |||||| ||||||| |||||    
T  27301058 atgcggttgaggaaaaaagtgatccgaatacatccaaatcaaatgcggttttttgcggtttcgatttggattggttcggtttgc 27300975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 7162254 - 7162206
Alignment:
Q  163 ggttgagtgaaaaatgatcctaatacatccaaatcaaatgcgatttttt 211  Q
    |||||||| ||||||||||| ||||||| |||| |||||||| ||||||    
T  7162254 ggttgagtcaaaaatgatccgaatacattcaaaccaaatgcgttttttt 7162206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 41166681 - 41166741
Alignment:
Q  159 atgcggttgagtgaaaaa-tgatcctaatacatccaaatcaaatgcgattttttacagttt 218  Q
    |||||||||||||||||| |||||  ||| |||||||| |||||||| |||||||| ||||    
T  41166681 atgcggttgagtgaaaaagtgatctgaatgcatccaaaccaaatgcggttttttacggttt 41166741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 18564708 - 18564777
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctcgaaa 112  Q
    ||||||| ||| ||| |||||||||||||||||||||| |||||||||||  |||| |||| ||||||||    
T  18564708 ttgtcttatagaggtttgaatcgattcactcatttagtaaatcgattcatttagttattttggctcgaaa 18564777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 24000950 - 24001009
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgtttt 103  Q
    ||||||||| || ||||||||||||||||||||| |||||||||||||| |||| ||||||    
T  24000950 ttgtctttt-gttgtctgaatcgattcactcattcagtgaatcgattcaccaaggtgtttt 24001009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 25925817 - 25925770
Alignment:
Q  44 tgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    |||||||| || |||||||||||||||  |||||||||||||||||||    
T  25925817 tgtctttttgttgtctgaatcgattcaagcatttagtgaatcgattca 25925770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 31944998 - 31944927
Alignment:
Q  172 aaaaatgatcctaatacatccaaatcaaatgcgattttttacagtttaagtttggactggttcgatttgcag 243  Q
    |||||| |||| ||||||||||||||||||| | |||||| |||||| | |||| | ||||| |||||||||    
T  31944998 aaaaattatccgaatacatccaaatcaaatgtggttttttgcagtttcaatttgaattggtttgatttgcag 31944927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 4877 - 4923
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattc 90  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||    
T  4877 ttgtctttt-gttgtctgaatcgattcactcatttagtgaatcgattc 4923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 78593 - 78545
Alignment:
Q  42 tttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  78593 tttgtctttta-tggtctgaatcgatttactcatttaatgaatcgattca 78545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 98484 - 98420
Alignment:
Q  44 tgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgttttagctc 108  Q
    |||||| ||| || ||||||| ||||||||||||| |||||||||||||  ||||||||| ||||    
T  98484 tgtcttatagaggcctgaatccattcactcatttaatgaatcgattcatttagttgttttggctc 98420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 16648397 - 16648337
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattcatcaagttgtttt 103  Q
    |||||||||||  |||||||| ||||||| ||||||||||| ||||||| || ||||||||    
T  16648397 ttgtcttttagctgtctgaattgattcacacatttagtgaaacgattcaccatgttgtttt 16648337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 8367472 - 8367424
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    |||||||||||| || |||||||||||| |||||  |||||||||||||    
T  8367472 ttgtcttttagttgtttgaatcgattcattcattaggtgaatcgattca 8367424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 18815095 - 18815139
Alignment:
Q  59 tgaatcgattcactcatttagtgaatcgattcatcaagttgtttt 103  Q
    |||||||||||||| |||||||||| ||| ||| |||||||||||    
T  18815095 tgaatcgattcacttatttagtgaaacgactcaccaagttgtttt 18815139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 1194 - 1146
Alignment:
Q  43 ttgtcttttagtggtctgaatcgattcactcatttagtgaatcgattca 91  Q
    |||| ||| ||| ||||||||||||||| | ||||||||||||||||||    
T  1194 ttgtatttcagttgtctgaatcgattcagtgatttagtgaatcgattca 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University