View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7279_low_2 (Length: 531)

Name: NF7279_low_2
Description: NF7279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7279_low_2
NF7279_low_2
[»] chr3 (15 HSPs)
chr3 (221-512)||(3701611-3701900)
chr3 (277-512)||(3712908-3713146)
chr3 (45-183)||(3701904-3702042)
chr3 (284-457)||(3705416-3705589)
chr3 (283-508)||(3719433-3719661)
chr3 (277-512)||(3707867-3708102)
chr3 (379-452)||(26807448-26807521)
chr3 (379-452)||(32775271-32775344)
chr3 (379-452)||(32814957-32815030)
chr3 (7-75)||(3702043-3702110)
chr3 (380-452)||(32772692-32772764)
chr3 (310-444)||(3716421-3716549)
chr3 (13-99)||(3713443-3713529)
chr3 (149-198)||(3713301-3713350)
chr3 (391-444)||(41845773-41845826)
[»] chr8 (8 HSPs)
chr8 (277-458)||(12482994-12483176)
chr8 (310-452)||(2105865-2106006)
chr8 (285-452)||(12289395-12289563)
chr8 (380-457)||(12670511-12670588)
chr8 (277-452)||(11949326-11949501)
chr8 (381-452)||(939435-939506)
chr8 (331-458)||(12482728-12482856)
chr8 (377-418)||(11949182-11949223)
[»] chr5 (4 HSPs)
chr5 (310-452)||(38327774-38327914)
chr5 (318-452)||(38322602-38322733)
chr5 (380-452)||(31965398-31965470)
chr5 (381-452)||(8219735-8219806)
[»] chr7 (2 HSPs)
chr7 (377-452)||(25796173-25796248)
chr7 (391-444)||(45343081-45343134)
[»] chr4 (4 HSPs)
chr4 (377-452)||(19185992-19186067)
chr4 (381-452)||(26741372-26741443)
chr4 (381-452)||(30161835-30161906)
chr4 (381-452)||(51386264-51386335)
[»] chr1 (5 HSPs)
chr1 (310-452)||(43848981-43849119)
chr1 (381-458)||(27981044-27981121)
chr1 (380-452)||(30953117-30953189)
chr1 (391-444)||(39755137-39755190)
chr1 (391-444)||(39760491-39760544)
[»] chr6 (2 HSPs)
chr6 (381-452)||(21882908-21882979)
chr6 (7-100)||(3520707-3520800)
[»] chr2 (4 HSPs)
chr2 (381-452)||(4767493-4767564)
chr2 (381-452)||(38551329-38551400)
chr2 (391-444)||(14428572-14428625)
chr2 (391-444)||(34962092-34962145)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 221 - 512
Target Start/End: Complemental strand, 3701900 - 3701611
Alignment:
Q  221 aattcaacagaattaacaataatatacaacnnnnnnntacactacttgaaatttgcaaaaataaaaagaaggagctcaggggtatggtattcatccaatg 320  Q
    ||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  3701900 aattcaacagaattaacaataatatacaacaaaaaaatacacgacttgaaatttgcaaaaataaaaa--aggagctcaggggtatggtattcatccaatg 3701803  T
Q  321 tttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatattgcaccagccgggaatcgaacccaggtctgtaccgtggca 420  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||||||| ||||||||||||||||    
T  3701802 tttcaggagaagtgatgttaccgaacaccacagatattatcatcatagctccctcaaatttgcaccagccgggaatcgaacccgggtctgtaccgtggca 3701703  T
Q  421 gggtactattctaccactagaccactggtgctatgttgctctattcaaaatgttgttagatatttaacatctagatactacaatgataatat 512  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3701702 gggtactattctaccactagaccactggtgctttgttgttctattcaaaatgttgttagatatttaacatctagatactataatgataatat 3701611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 277 - 512
Target Start/End: Complemental strand, 3713146 - 3712908
Alignment:
Q  277 aaaaataaaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcg 376  Q
    |||||||||||||| |||||||| || ||  | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3713146 aaaaataaaaagaaagagctcagaggcattattttcatccaatgtttcaggagaagtgatgttaccgaacaccacagatattatcatcatagctccctcg 3713047  T
Q  377 atattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgttgctc---tattcaaaatgt 473  Q
    |   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||   |  | | |||||    
T  3713046 aatatgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgttcatttgatgataatgt 3712947  T
Q  474 tgttagatatttaacatctagatactacaatgataatat 512  Q
    | |||||||||||||||||| | ||||||||||||||||    
T  3712946 tattagatatttaacatctatagactacaatgataatat 3712908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 3702042 - 3701904
Alignment:
Q  45 gtagctcatgaaccttaaaaccaaggagcactctagtcctggcatatcctctatacataccattcctgcgacgaagccatttccaccatgcacaagggat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3702042 gtagctcatgaaccttaaaaccaaggagcactctagtcctggcatatcctctatacataccattgctgcgacgaagccatttccaccatgcacaagggat 3701943  T
Q  145 gactcgaaaacaggacatgctccttcttttgaacagtta 183  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  3701942 gactcgaaaacaggacatgcttcttcttttgaacagtta 3701904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 284 - 457
Target Start/End: Complemental strand, 3705589 - 3705416
Alignment:
Q  284 aaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatattgc 383  Q
    ||||||| |||||||| |||||  | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| | |||||    
T  3705589 aaaagaaagagctcagaggtattattttcatccaatgtttcaggagaagtgatgttaccgaacaacacatatattatcatcatagctccctcaaaattgc 3705490  T
Q  384 accagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgtt 457  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3705489 accagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgtt 3705416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 283 - 508
Target Start/End: Complemental strand, 3719661 - 3719433
Alignment:
Q  283 aaaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgtt-accgaa-caccacaaatattatcatcatagctccctcgatat 380  Q
    ||||||| ||||||||| |||||| | ||||||| |||||||||||| | ||||||| |||||| ||| |||||| || |||||||||||||||  | ||    
T  3719661 aaaaagatggagctcagaggtatgtttttcatcctatgtttcaggaggaatgatgtttaccgaaacacaacaaatgttttcatcatagctccctgcaaat 3719562  T
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgttgctc-tattcaaaatgttgttag 479  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||  | | || | ||| || ||||    
T  3719561 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgtacattttgacaatattattag 3719462  T
Q  480 atatttaacatctagatactacaatgata 508  Q
    || |||||||||||||  |||||||||||    
T  3719461 atctttaacatctagagcctacaatgata 3719433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 277 - 512
Target Start/End: Complemental strand, 3708102 - 3707867
Alignment:
Q  277 aaaaataaaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcg 376  Q
    ||||| ||||| ||||||||||| |||||  | ||||||| ||| ||||||| | || |||||||| |||| |||||||||| |||||| ||| ||        
T  3708102 aaaaaaaaaaaaaaggagctcagaggtattattttcatccgatgattcaggaaaggtaatgttaccaaacatcacaaatattttcatcacagcccca--- 3708006  T
Q  377 atattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct---atgttgctctattcaaaatgt 473  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    ||||| |||||| | |||||    
T  3708005 atattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttgttgttctattgataatgt 3707906  T
Q  474 tgttagatatttaacatctagatactacaatgataatat 512  Q
    | ||| || ||||||||||||| ||| ||||||||||||    
T  3707905 tattacatctttaacatctagacactgcaatgataatat 3707867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 26807448 - 26807521
Alignment:
Q  379 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26807448 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 26807521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 379 - 452
Target Start/End: Complemental strand, 32775344 - 32775271
Alignment:
Q  379 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32775344 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 32775271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 379 - 452
Target Start/End: Complemental strand, 32815030 - 32814957
Alignment:
Q  379 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32815030 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 32814957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 3702110 - 3702043
Alignment:
Q  7 tcgaataatatgcaaaacactaggatcgccacataaatgtagctcatgaaccttaaaaccaaggagcac 75  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3702110 tcgaacaatatgcaaaacactaggatcgccacataaatgtagctcatgaacctt-aaaccaaggagcac 3702043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 380 - 452
Target Start/End: Complemental strand, 32772764 - 32772692
Alignment:
Q  380 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||| || |||||| |||||    
T  32772764 ttgcagcagccaggaatcaaacccaagtctgtaccgtggcagggtactattctaccattaaaccacttgtgct 32772692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 310 - 444
Target Start/End: Complemental strand, 3716549 - 3716421
Alignment:
Q  310 ttcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatattgcaccagccgggaatcgaacccaggtct 409  Q
    |||||||||| |||||||| |||||||||||||||| | || || |||| | |||| | |||||| ||  |||||||||| ||||||||||||| | |||    
T  3716549 ttcatccaatttttcaggacaagtgatgttaccgaaaatcagaattatttttatcacaactccctagaatttgcaccagctgggaatcgaacccggatct 3716450  T
Q  410 gtaccgtggcagggtactattctaccactagacca 444  Q
    | |||      ||||||||||||||||||||||||    
T  3716449 gaacc------gggtactattctaccactagacca 3716421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 3713529 - 3713443
Alignment:
Q  13 aatatgcaaaacactaggatcgccacataaatgtagctcatgaaccttaaaaccaaggagcactctagtcctggcatatcctctata 99  Q
    ||||||||||||||||||||| || |||||||||||||||| | |||| ||||||| ||| |||||||| | |||||| || |||||    
T  3713529 aatatgcaaaacactaggatcaccgcataaatgtagctcatcatcctttaaaccaatgagtactctagtacaggcatacccactata 3713443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 3713350 - 3713301
Alignment:
Q  149 cgaaaacaggacatgctccttcttttgaacagttaacagacttcaataaa 198  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||||||||    
T  3713350 cgaaaacaggacatgcttcttcttttgaccagttaacggacttcaataaa 3713301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 41845773 - 41845826
Alignment:
Q  391 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 444  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  41845773 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 41845826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 277 - 458
Target Start/End: Original strand, 12482994 - 12483176
Alignment:
Q  277 aaaaataaaaagaaggagctcaggggtatggtat-tcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctc 375  Q
    ||||| |||||||||||||||||||||||  ||| ||||||| | |||||||| ||||||||||||| |||| |||| || | |||||||||||||| ||    
T  12482994 aaaaaaaaaaagaaggagctcaggggtata-tatgtcatccagtatttcaggataagtgatgttacctaacatcacagatgtcatcatcatagctccatc 12483092  T
Q  376 -gatattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgttg 458  Q
     ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12483093 tgaagttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttg 12483176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 310 - 452
Target Start/End: Complemental strand, 2106006 - 2105865
Alignment:
Q  310 ttcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatat-tgcaccagccgggaatcgaacccaggtc 408  Q
    ||||||||||| ||||||| | |||||||||||||||| |||||||||| ||||||||||  |||| | |  ||||||||||||||||||||||| ||||    
T  2106006 ttcatccaatggttcaggataggtgatgttaccgaacatcacaaatattttcatcatagc--cctccacaggtgcaccagccgggaatcgaacccgggtc 2105909  T
Q  409 tgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2105908 tgtaccgtggcagggtactattctaccactagaccactggtgct 2105865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 285 - 452
Target Start/End: Complemental strand, 12289563 - 12289395
Alignment:
Q  285 aaagaaggagctcaggggtatggtat-tcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctc--gatatt 381  Q
    ||||||||||||||||||| |  ||| ||||||| | ||| |||| | ||||||||||| ||||||||||| ||||||||||| ||||| ||  || |||    
T  12289563 aaagaaggagctcaggggtgta-tatgtcatccattatttgaggataggtgatgttacccaacaccacaaacattatcatcattgctccttcacga-att 12289466  T
Q  382 gcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12289465 gcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 12289395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 380 - 457
Target Start/End: Original strand, 12670511 - 12670588
Alignment:
Q  380 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgtt 457  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12670511 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgtt 12670588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 277 - 452
Target Start/End: Original strand, 11949326 - 11949501
Alignment:
Q  277 aaaaataaaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcg 376  Q
    ||||| ||| ||||||||||||| |||||  |  ||||| | | |||||||| | | ||||||||| ||||||||||| ||||||||||||||||  ||     
T  11949326 aaaaaaaaacagaaggagctcagaggtatatttatcatcaagtttttcaggatagg-gatgttacccaacaccacaaacattatcatcatagctcattca 11949424  T
Q  377 ata-ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    |   ||||||||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  11949425 agggttgcaccagccaggaattgaacccgggtctgtagcgtggcagggtactattctaccactagaccactggtgct 11949501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 939435 - 939506
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  939435 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 939506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 331 - 458
Target Start/End: Original strand, 12482728 - 12482856
Alignment:
Q  331 agtgatgttaccgaacaccacaaatattatcatcatagctccctc-gatattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactat 429  Q
    |||||||||||| |||||||||   ||||||||||||||||  || |   ||||||||||| ||||| |||||| |||||||||| ||||||||||||||    
T  12482728 agtgatgttacccaacaccacatgcattatcatcatagctcattcaggggttgcaccagccaggaattgaacccgggtctgtaccatggcagggtactat 12482827  T
Q  430 tctaccactagaccactggtgctatgttg 458  Q
    ||||||||||||||||||||||| |||||    
T  12482828 tctaccactagaccactggtgctttgttg 12482856  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 11949182 - 11949223
Alignment:
Q  377 atattgcaccagccgggaatcgaacccaggtctgtaccgtgg 418  Q
    |||||||||||||||||||| |||||| |||||| |||||||    
T  11949182 atattgcaccagccgggaattgaacccgggtctgaaccgtgg 11949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 310 - 452
Target Start/End: Complemental strand, 38327914 - 38327774
Alignment:
Q  310 ttcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatattgcaccagccgggaatcgaacccaggtct 409  Q
    |||||||| |||||||||  | ||||||||||| ||||||||||||||| |||||| |||||  |    | ||||||||||||||||||||||| |||||    
T  38327914 ttcatccagtgtttcagggaaggtgatgttacccaacaccacaaatattttcatcacagctc--taagaaatgcaccagccgggaatcgaacccgggtct 38327817  T
Q  410 gtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38327816 gtaccgtggcagggtactattctaccactagaccactggtgct 38327774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 318 - 452
Target Start/End: Complemental strand, 38322733 - 38322602
Alignment:
Q  318 atgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatattgcaccagccgggaatcgaacccaggtctgtaccgtg 417  Q
    ||||||||||| | ||||||| ||| |||||||||| |||| |||||| |||||  ||   | ||||||||||||||||||||||| |||||||||||||    
T  38322733 atgtttcaggaaaggtgatgt-acccaacaccacaactattttcatcacagctc--tcagaaatgcaccagccgggaatcgaacccgggtctgtaccgtg 38322637  T
Q  418 gcagggtactattctaccactagaccactggtgct 452  Q
    |||||||||||||||||||||||||||||||||||    
T  38322636 gcagggtactattctaccactagaccactggtgct 38322602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 380 - 452
Target Start/End: Original strand, 31965398 - 31965470
Alignment:
Q  380 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965398 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 31965470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 452
Target Start/End: Complemental strand, 8219806 - 8219735
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8219806 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 8219735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 377 - 452
Target Start/End: Complemental strand, 25796248 - 25796173
Alignment:
Q  377 atattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25796248 atattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 25796173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 45343081 - 45343134
Alignment:
Q  391 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 444  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  45343081 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 45343134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 377 - 452
Target Start/End: Complemental strand, 19186067 - 19185992
Alignment:
Q  377 atattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19186067 atattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 19185992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 26741372 - 26741443
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26741372 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 26741443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 452
Target Start/End: Complemental strand, 30161906 - 30161835
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161906 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30161835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 51386264 - 51386335
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386264 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 51386335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 310 - 452
Target Start/End: Original strand, 43848981 - 43849119
Alignment:
Q  310 ttcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattat-catcatagctccctcgatattgcaccagccgggaatcgaacccaggtc 408  Q
    |||||||| |||||||||| || |||||||||| |||| ||  ||||| || ||||| |||||     | ||||||||||||||||||||||||| ||||    
T  43848981 ttcatccagtgtttcaggataattgatgttacccaacatcatgaatataattcatcacagctc-----aaattgcaccagccgggaatcgaacccgggtc 43849075  T
Q  409 tgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43849076 tgtaccgtggcagggtactattctaccactagaccactggtgct 43849119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 381 - 458
Target Start/End: Complemental strand, 27981121 - 27981044
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgctatgttg 458  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27981121 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgctttgttg 27981044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 380 - 452
Target Start/End: Original strand, 30953117 - 30953189
Alignment:
Q  380 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30953117 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 30953189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 39755190 - 39755137
Alignment:
Q  391 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 444  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39755190 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39755137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 39760544 - 39760491
Alignment:
Q  391 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 444  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  39760544 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 39760491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 452
Target Start/End: Complemental strand, 21882979 - 21882908
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21882979 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 21882908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 3520707 - 3520800
Alignment:
Q  7 tcgaataatatgcaaaacactaggatcgccacataaatgtagctcatgaaccttaaaaccaaggagcactctagtcctggcatatcctctatac 100  Q
    ||||| ||||| ||||||||||||||| || |||||||||| ||| | | || | |||||||||||| | |||||||  ||||| |||||||||    
T  3520707 tcgaacaatatccaaaacactaggatcaccgcataaatgtatctcgtcagccatcaaaccaaggagcgccctagtccatgcataacctctatac 3520800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 452
Target Start/End: Original strand, 4767493 - 4767564
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4767493 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 4767564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 452
Target Start/End: Complemental strand, 38551400 - 38551329
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagaccactggtgct 452  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551400 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtactattctaccactagaccactggtgct 38551329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 14428625 - 14428572
Alignment:
Q  391 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 444  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  14428625 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 14428572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 34962145 - 34962092
Alignment:
Q  391 gggaatcgaacccaggtctgtaccgtggcagggtactattctaccactagacca 444  Q
    ||||||||||||| |||| ||||||||| ||||||||||  |||||||| ||||    
T  34962145 gggaatcgaaccctggtcagtaccgtgggagggtactatgataccactacacca 34962092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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