View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7279_low_3 (Length: 471)
Name: NF7279_low_3
Description: NF7279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7279_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 8260704 - 8261155
Alignment:
| Q |
19 |
ttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8260704 |
ttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgc |
8260803 |
T |
|
| Q |
119 |
actttgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatatc |
218 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8260804 |
actttgaagagggttttctgtttatgtaagtgtggaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatatc |
8260903 |
T |
|
| Q |
219 |
atatgagatctgataatagtcaaattgcttggtgagcaaggaaaacataaagggaccactttggnnnnnnnnnt--------tcatttgtggctgctttg |
310 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | |||||||||||||||| |
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| T |
8260904 |
atatgagatatgataatagtcaaattgcttggtgaccaaggaaaacataaagggaccactttggaaaaaaaaataaaaaaaataatttgtggctgctttg |
8261003 |
T |
|
| Q |
311 |
ggcacttgttaattgaaaacaaaatgttgtttcgtttgtctttttcattgcttatttggtgcgtgcaatatggttatgaggaacaagtcaaggtctaagt |
410 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8261004 |
aacacttgttaattagaatcaaaatgttgtttcgtttgtctttttcattgcttatttggtgcctgcaatatggttatgaggaacaagtcaaggtctaagt |
8261103 |
T |
|
| Q |
411 |
atgattgaccatcgccaaacaagtttctttaagagagtacatcaagtattat |
462 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
8261104 |
atgattgaccatcgccaaacaattttctttaagagagtacatcaagtattat |
8261155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 8265670 - 8265874
Alignment:
| Q |
19 |
ttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttg |
117 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
8265670 |
ttttcatcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaaagtgatttaatttg |
8265769 |
T |
|
| Q |
118 |
cactttgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat |
217 |
Q |
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|||||||||| |||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| || |
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| T |
8265770 |
cactttgaagtgggtttcttgtttatgtaagtgtggaaagctgaaatgatttagttgtgggttgaacttcatgtaattaacttgatccatttatagacat |
8265869 |
T |
|
| Q |
218 |
catat |
222 |
Q |
| |
|
||||| |
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|
| T |
8265870 |
catat |
8265874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 8258597 - 8258915
Alignment:
| Q |
19 |
ttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||| |
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| T |
8258597 |
ttttcatcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaaagtgatttaatttg |
8258696 |
T |
|
| Q |
118 |
cactttgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagt---taacttgatctatttatag- |
213 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |
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|
| T |
8258697 |
cactttgaagtgggttttttgtttatgtaagtgtgcaaagctgaaatgatttagttgtgggttgaacttcatgtaattaataacttgatctatttataga |
8258796 |
T |
|
| Q |
214 |
-----------atatcatatgagatctgataatagtcaaattgcttggtgagcaaggaaaacataaa-gggaccactttggnnnnnnnnnttcatttgtg |
301 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||| || |||| | ||| |||| |||||||||||| |||||||||| |
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| T |
8258797 |
gttatcatttcatatcatatgagatatgatgatagtcaaattgcttggcgaccaagcagaacctaaatgggaccactttg---aaaaaaattcatttgtg |
8258893 |
T |
|
| Q |
302 |
gctgctttgggcacttgttaat |
323 |
Q |
| |
|
|||||||||| ||||||||||| |
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| T |
8258894 |
gctgctttggacacttgttaat |
8258915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 8350117 - 8350220
Alignment:
| Q |
18 |
attttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttg |
117 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8350117 |
attttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtgatttaatttg |
8350216 |
T |
|
| Q |
118 |
cact |
121 |
Q |
| |
|
|||| |
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|
| T |
8350217 |
cact |
8350220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 8352862 - 8352964
Alignment:
| Q |
19 |
ttttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgc |
118 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||| ||||| | ||||||||| | || || |||||||||||||||||||||||||||||| ||||| |
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| T |
8352862 |
ttttcatcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttgc |
8352961 |
T |
|
| Q |
119 |
act |
121 |
Q |
| |
|
||| |
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|
| T |
8352962 |
act |
8352964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 8252963 - 8253046
Alignment:
| Q |
18 |
attttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa |
101 |
Q |
| |
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||||||| ||| ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| |||||||||||||||||||| |
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|
| T |
8252963 |
attttcagcattatcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa |
8253046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 8356436 - 8356508
Alignment:
| Q |
26 |
cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat |
98 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| | ||||||||| | ||||| | | ||||||||||||| |
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|
| T |
8356436 |
cataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat |
8356508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 8360601 - 8360681
Alignment:
| Q |
18 |
attttcatcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat |
98 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| | |||| | || |||||| | ||||| | ||||||||||||||| |
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|
| T |
8360601 |
attttcaacataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat |
8360681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 8265901 - 8265949
Alignment:
| Q |
234 |
atagtcaaattgcttggtgagcaaggaaaacataaa-gggaccactttg |
281 |
Q |
| |
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||||||||||||||||| || |||||| |||||||| |||||||||||| |
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|
| T |
8265901 |
atagtcaaattgcttggcgaccaaggagaacataaatgggaccactttg |
8265949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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