View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7279_low_7 (Length: 307)
Name: NF7279_low_7
Description: NF7279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7279_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 39562105 - 39562386
Alignment:
| Q |
20 |
agtctgatatggtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttgtactga |
119 |
Q |
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| T |
39562105 |
agtctgatatggtattggtttatgaatccacagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttgtactga |
39562204 |
T |
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| Q |
120 |
ctaaaattcttgaatgctggcctcaattggcagccatgaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtgataatgt |
219 |
Q |
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| T |
39562205 |
ctaaagttcttgaatgctggcctcaattggcagccatcaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtgataatgt |
39562304 |
T |
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| Q |
220 |
acattaactattattagaaaacattgcaaaattttcctaccactcatcaagcttacagtaatatagtctgtgtctctgctac |
301 |
Q |
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| T |
39562305 |
acattaattattattagaaaacattgcaaaattttcctaccactcatcaagcttacagtaatatagtctgtgtctctgctac |
39562386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 39572295 - 39572532
Alignment:
| Q |
20 |
agtctgatatggtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttgtactga |
119 |
Q |
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| T |
39572295 |
agtctgatttggtattgggttatgaatccacagtatcttaatgcaatccataactgggacaccaaaagtaatattagaataaccaaggtttttgtactaa |
39572394 |
T |
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| Q |
120 |
ctaaaattcttgaatgctggcctcaattggcagccatgaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtgataatgt |
219 |
Q |
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| T |
39572395 |
ctaaaacccttgaatgctggcttccacta-ca-ccatcaataaaactagaaccctcagttggcattcttatctaattaaactcactagttgtgataatgt |
39572492 |
T |
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| Q |
220 |
acattaactattattagaaaacattgcaaaattttcctac |
259 |
Q |
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| T |
39572493 |
acattaattattattagaaaacattgcaaaattttcctac |
39572532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 39566786 - 39567060
Alignment:
| Q |
22 |
tctgatatggtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttgtactgact |
121 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566786 |
tctgatatggtattgggttatgaatccacagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttgtactgact |
39566885 |
T |
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| Q |
122 |
aaaattcttgaatgctggcctcaattggcagccatgaataaaactagaaccctcagttggcattcttatctaattaaactcac-tagttgtgataatgta |
220 |
Q |
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| T |
39566886 |
aaaattcttgaatgctggtatcaattgacagccatcaataaagctagaa-cctcagttggcatttttatctgattaaactcacttagttgtaataatgta |
39566984 |
T |
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| Q |
221 |
cattaactattattagaaaacat-tgcaaaattttcctaccactcatcaagcttacagtaatatagtctgtgtctctgc |
298 |
Q |
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| T |
39566985 |
catt-attat--tttgaaaacatgtacggaattttcctaccactcattaagcttacaaatatatagtctgtgtctctgc |
39567060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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