View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7279_low_9 (Length: 249)
Name: NF7279_low_9
Description: NF7279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7279_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 40227274 - 40227033
Alignment:
| Q |
8 |
cgaagaatattattaatataggtaaaattaggtacgccccttaatgaaacaaaacataattgaggtagatgggaaggatccaacgttaaaaatggtccat |
107 |
Q |
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| T |
40227274 |
cgaaaaatattattaatataggtaaaattaggtacgccccttaatgaaacaaaacataattgaggtagatgggaaggatccaacgttaaaaatggtccat |
40227175 |
T |
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| Q |
108 |
gaaaaattaatagttgtcattatttactattatgaatccataaaagagttctccttctgttagctggcatgataaattggaacctaagaaaaaccaccta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40227174 |
gaaaaattaatagttgtcattatttactattatgaatccataaaagagttctccttctgttagctggcatgataaattggaacctaagaaaaaccaccta |
40227075 |
T |
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| Q |
208 |
aaatcctatattgaggaaacaactttatataatgacacaatt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
40227074 |
aaatcctatattgaggaaacaactttatataatgacacaatt |
40227033 |
T |
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