View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7280_high_11 (Length: 252)
Name: NF7280_high_11
Description: NF7280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7280_high_11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 780556 - 780313
Alignment:
| Q |
8 |
tagcagagacatcacaaaaacttcaaacaaactaaaaattacagattgaaagataaaaggaacgatcaatttagaaaaataacacaaatatatgtcgcag |
107 |
Q |
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| T |
780556 |
tagcacagacatcacaaaaacttcaaacaaactaaaaattacagattgaaagataaaaggaacgatcaatttc-aaaaataacacaaatatatgtcgcag |
780458 |
T |
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| Q |
108 |
gtaagatttatcttttgatagtaactccgaatatataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattc |
207 |
Q |
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| T |
780457 |
gtaagatttatcttttgatagtaactgcgaatatataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattc |
780358 |
T |
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| Q |
208 |
ttctttatctcacagatgacaaatcctgattttgttccatttggc |
252 |
Q |
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| T |
780357 |
ttctttatctcacagatgacaaaccctgattttgttccatttggc |
780313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 141 - 252
Target Start/End: Original strand, 770921 - 771032
Alignment:
| Q |
141 |
tataactgagtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattcttctttatctcacagatgacaaatcctgatttt |
240 |
Q |
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| T |
770921 |
tataactgagtaaatgcttacatcaataattggtggctgccctttgagtccaacttttagatggttcttcttaatctcacagatgacaaaccctgatttt |
771020 |
T |
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| Q |
241 |
gttccatttggc |
252 |
Q |
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| T |
771021 |
gttccatttggc |
771032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 785110 - 785008
Alignment:
| Q |
150 |
gtaaaagcttacatcaataattggtggctgccctttgagtccaacttttagatgattcttctttatctcacagatgacaaatcctgattttgttccattt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||| ||| |
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| T |
785110 |
gtaaaagcttacatcaataattggtggctgccctttgattccaacttttagatggttcttctttatctcacatgtgacaaaccttgattttgttccgttt |
785011 |
T |
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| Q |
250 |
ggc |
252 |
Q |
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||| |
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| T |
785010 |
ggc |
785008 |
T |
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