View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7280_high_14 (Length: 223)
Name: NF7280_high_14
Description: NF7280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7280_high_14 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 780086 - 780313
Alignment:
| Q |
1 |
tttgattgtgcgtgatggaatcaattttgtgttttatatcacttaactattcatta----ctggaatagtaacaaataacactaaatggttatcaacttt |
96 |
Q |
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| T |
780086 |
tttgattgtgcatgatggaatcaattttgtgttttatatcacttaactattcattagctactggaatagtaacaaataacactaaatggttatcaacttt |
780185 |
T |
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| Q |
97 |
actattttaaggnnnnnnnacacctttgttctttataatggaca-ctccaaatcatggtaatggcatggatctggagaaatattcctggactcaaacttt |
195 |
Q |
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| T |
780186 |
actattttaaggtttttttacacctttgttctttataatggacagctccaaatcaaggtaatggcatggatctggagaaatattcctggactcaaacttt |
780285 |
T |
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| Q |
196 |
gcaagagctcaatgtgaatgttccggtg |
223 |
Q |
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| T |
780286 |
gcaagagctcaatgtgaatgttccggtg |
780313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 771133 - 771036
Alignment:
| Q |
123 |
tgttctttataatggaca-ctccaaatcatggtaatggcatggatctggagaaatattcctggactcaaactttgcaagagctcaatgtgaatgttcc |
219 |
Q |
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| T |
771133 |
tgttttttataatggacagcaccaaatcagggtaatggtatggatttggagaagtattcctggactcaaactttgcaagagctgaatgtgaatgttcc |
771036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 784904 - 785004
Alignment:
| Q |
120 |
ctttgttctttataatggaca-ctccaaatcatggtaatggcatggatctggagaaatattcctggactcaaactttgcaagagctcaatgtgaatgttc |
218 |
Q |
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| T |
784904 |
ctttgctctttttaattgacagctcccaatcagggtaatggtatggatctggagaaatattcttggactcaaactcttcaagagctcaatgtgaatgttc |
785003 |
T |
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| Q |
219 |
c |
219 |
Q |
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| T |
785004 |
c |
785004 |
T |
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