View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7280_high_3 (Length: 426)
Name: NF7280_high_3
Description: NF7280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7280_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 18722922 - 18722526
Alignment:
| Q |
18 |
attacaagttttcaccgcaacacaatgctagaaacacaaaaatcctgcatgcccatttgcttaaaactcattatttacaatctggtatctttttcatgga |
117 |
Q |
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| T |
18722922 |
attacaagttttcaccgcaacacaatgctagaaacacaaaaatcctgcatgcccatttgcttaaaactcattatttacaatctggtatctttttcatgga |
18722823 |
T |
|
| Q |
118 |
ctcattgattggtttgtattgtaaatcttctgatatggttcttgctcataagctgttcgatacaattactcaacccagtattgtttcttggaatgttatg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18722822 |
ctcattgattggtttgtattgtaaatcttctgatatggttcttgctcataagctgttcgatacaattactcaaccgagtattgtttcttggaatgttatg |
18722723 |
T |
|
| Q |
218 |
atatctggttacgttcgtaattcgatgtttttgaagtcgttggagatgttttgtaggatgcatttgtttggttttgagcctgatgagtttagttatggga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18722722 |
atatctggttacgttcgtaattcgatgtttttgaagtcgttggagatgttttgtaggatgcatttgtttggttttgagcctgatgagtttagttatggga |
18722623 |
T |
|
| Q |
318 |
gtgttctttctgcttgtgttgctttgcaggcttcgatgttcggtttgcaagttttttcacttgttgtgaaaaatggttttttgtcgagtggtgatgt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18722622 |
gtgttctttctgcttgtgttgctttgcaggcttcgatgtttggtttgcaagttttttcacttgttgtgaaaaatggttttttgtcgagtggttatgt |
18722526 |
T |
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