View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7280_high_4 (Length: 371)
Name: NF7280_high_4
Description: NF7280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7280_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 58 - 365
Target Start/End: Complemental strand, 405553 - 405246
Alignment:
| Q |
58 |
atccacaaaaataaagagcatgaaggtaataaacttgggaatggatactttgatcattggcaacttggcattattattcatcaaattaagaatccaatcc |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
405553 |
atccacaaaaataaagagcatgaaggtaataaacttgggaatggatactttcatcattggcaacttggcattattattcatcaaattaagaaaccaatcc |
405454 |
T |
|
| Q |
158 |
aaaatctatttagtcaatcaacagtcaggggatagaaactatcatgacaaatccatccccctaagca--nnnnnnnnnacaaatccaatctatacagtat |
255 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
405453 |
aaaatctatttagtcaatcaacaatcaggggatagaaactatcattacaaatccacccccctaagcatttttttttttacaaatccaatctatacagtat |
405354 |
T |
|
| Q |
256 |
atagtatataccgtgtgtgttcattttgcttttgagtatacatcaaaaatctaaattgagcatcaacagtgattacaccttacacattctaatacatgtc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
405353 |
atagtatataccgtgtgtgttcattttgc--ttgagtatacatcaaaaatctaaattgagcatcaacagtgattacaccttacacattctaatacatgtc |
405256 |
T |
|
| Q |
356 |
taacaccaaa |
365 |
Q |
| |
|
||||||||| |
|
|
| T |
405255 |
gaacaccaaa |
405246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 403864 - 403748
Alignment:
| Q |
18 |
atcattacaatacaagcagctggaattaactattaaggggatccacaaaaataaagagcatgaaggtaataaacttgggaatggatactttgatcattgg |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| || | || ||||||||| || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
403864 |
atcattacaatacaagcaggtggaattaaatattaaggg-----actagaagaaagagcatcaaattaagaaacttgggaatgaatactttgatcattaa |
403770 |
T |
|
| Q |
118 |
caacttggcattattattcatc |
139 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
403769 |
caacttggcattattattcatc |
403748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University