View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7280_high_5 (Length: 366)
Name: NF7280_high_5
Description: NF7280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7280_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 102 - 351
Target Start/End: Original strand, 8725104 - 8725351
Alignment:
| Q |
102 |
ttcaacacgacacaattatcaacaagacagcgtgtttacaagatagggttataaatagatctactagaagacatcactaaacattctaggaaaatcccaa |
201 |
Q |
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| T |
8725104 |
ttcaacacgacacaattatcaacaagacagcgtgtatacaagatagggttataaatagatctgctagaagacatcattaaacattctaagaaaatcccaa |
8725203 |
T |
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| Q |
202 |
tgcatggtctatcaaatcaacaaaaatgttaatctatctcaagagaatacctgggagggttaagggcgatatgtagtgattcagaaggtgaagttctagt |
301 |
Q |
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| T |
8725204 |
tgcatggtctatcaaatcaacaaaaatgttaatctatctcaagagaatacctgg--ggattaagggcgatatgtagtgattcagaaggtgaagttctagt |
8725301 |
T |
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| Q |
302 |
cacagcaacctggaatatgaattgtttcaatgattcgagcactttgtgat |
351 |
Q |
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| T |
8725302 |
cgcagcaacctggaatatgaaatgtttcaatgattcgagccctttgtgat |
8725351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 115 - 257
Target Start/End: Original strand, 8679001 - 8679143
Alignment:
| Q |
115 |
aattatcaacaagacagcgtgtttacaagatagggttataaatagatctactagaagacatcactaaacattctaggaaaatcccaatgcatggtctatc |
214 |
Q |
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| T |
8679001 |
aattatcaacaagacaacatgtatacatgatggggttataaatagatctactaaaatacatcactaaacattctgggaaaatcccaatgcagggtctatc |
8679100 |
T |
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| Q |
215 |
aaatcaacaaaaatgttaatctatctcaagagaatacctggga |
257 |
Q |
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| T |
8679101 |
aaatcaacacaaatttgaatctatctcaagagaatacatggga |
8679143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 8684214 - 8684296
Alignment:
| Q |
269 |
gatatgtagtgattcagaaggtgaagttctagtcacagcaacctggaatatgaattgtttcaatgattcgagcactttgtgat |
351 |
Q |
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| T |
8684214 |
gatatgtagagattcagaaggtgaggtgctaggcgcagcgaattggagtatgaattgtttcaatgattcgagcacattgtgat |
8684296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 8725028 - 8725071
Alignment:
| Q |
32 |
caaaacacagatattaaagaataagacactcttgctaatgcaag |
75 |
Q |
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| T |
8725028 |
caaaacacagatattaaagaagaagacactcttgctaatgcaag |
8725071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 110 - 351
Target Start/End: Complemental strand, 21232490 - 21232251
Alignment:
| Q |
110 |
gacacaattatcaacaagacagcgtgtttacaagatagggttataaatagatctactagaagacatcactaaacattctaggaaaatcccaatgcatggt |
209 |
Q |
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| T |
21232490 |
gacacaattatcaacaagacgacgtgtgtacatgatggggttataaatagatatacaagaatacatcactaaacatcatgggaaaatctcaatgcagggt |
21232391 |
T |
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| Q |
210 |
ctatcaaatcaacaaaaatgttaatctatctcaagagaatacctgggagggttaagggcgatatgtagtgattcagaaggtgaagttctagtcacagcaa |
309 |
Q |
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| T |
21232390 |
ctatcaaatcaacacaaatgttaatttatctcaagagaatatctgg--ggattaagtgcgatatgtagagattcagaaggtgaagtgctatgcgcagcaa |
21232293 |
T |
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| Q |
310 |
cctggaatatgaattgtttcaatgattcgagcactttgtgat |
351 |
Q |
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| T |
21232292 |
cctggagtatgaattgtttcaatgattccagcactttgtgat |
21232251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 110 - 351
Target Start/End: Complemental strand, 23434607 - 23434368
Alignment:
| Q |
110 |
gacacaattatcaacaagacagcgtgtttacaagatagggttataaatagatctactagaagacatcactaaacattctaggaaaatcccaatgcatggt |
209 |
Q |
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||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||| || |||| ||| || ||||| |||||||||||||||||||| |
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| T |
23434607 |
gacacaattatcaacaagacagcatgtatacatgatggggttataaatagatctactaaaatacattacttaaaattctgggaaaatcccaatgcatggt |
23434508 |
T |
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| Q |
210 |
ctatcaaatcaacaaaaatgttaatctatctcaagagaatacctgggagggttaagggcgatatgtagtgattcagaaggtgaagttctagtcacagcaa |
309 |
Q |
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| T |
23434507 |
ctaacaaatcaacacaaatgtgaatctatctcaagagaatacctag--ggattaagtgtgatatgtagagattcagaaggtgaggtgcagggcgcatcga |
23434410 |
T |
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| Q |
310 |
cctggaatatgaattgtttcaatgattcgagcactttgtgat |
351 |
Q |
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| T |
23434409 |
cttggactatgaattgtttcaatgattcgagcacattgtgat |
23434368 |
T |
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