View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7280_high_9 (Length: 305)
Name: NF7280_high_9
Description: NF7280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7280_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 32104177 - 32104447
Alignment:
| Q |
19 |
ctagcttggtttttgattgtacgagataatatatnnnnnnnnngtgtagcacaaacagtaataaaacacaactagagattattatgagtacaacgatgat |
118 |
Q |
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| T |
32104177 |
ctagcttggtttttgattgtacgagataatatataaaaaaaa-gtgtagcacaaacagtaataaaacacaactagagattattatgagtacaacaatgat |
32104275 |
T |
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| Q |
119 |
aaatgaagagtacaaggatgataaataaagacctttgaatttcatacactcgtttaatatcatcaatatattatatctatcatannnnnnnnnnnnnnnn |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || ||||| | |
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| T |
32104276 |
aaatgaagagtacaaggatgataaataaagacctttgaatttcatacactcgtttaacatcatcaacatattacatttatcacatctttcttcttttctc |
32104375 |
T |
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| Q |
219 |
nnnnnnnnaaggtgtatacatttatatgagatgtacaccaaacattttccttcgaagtaattgatacttcat |
290 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| |
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| T |
32104376 |
tttcttttaaggtgtatacatttatatgaggtgtataccaaacattttccttcgaagtaatcgatacttcat |
32104447 |
T |
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