View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7280_low_10 (Length: 329)
Name: NF7280_low_10
Description: NF7280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7280_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 39517861 - 39518156
Alignment:
| Q |
17 |
tggtggtataagaccctagtttcggtgggttggaaataaatgaaagtgagaatcattgaaatagtatatagtttttggttcaattatatgatatttatga |
116 |
Q |
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| T |
39517861 |
tggtggtataagaccctagtttcggtgggttggaaagaaatgaaagtgagaatcattgaaatagtatatagtttttggttcaattatatgatatttatga |
39517960 |
T |
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| Q |
117 |
gttcaaagaacttactcttctccaacatctctgagtatattggtgagttgatttgcaattcctagtgccaatgctgcattataaatgctctctgttgaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39517961 |
gttcaaagaacttactcttctccaacatctctgagtatattggtgagttgatttgcaattcctagtgccaatgctgcattataaatgctctctgttgaag |
39518060 |
T |
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| Q |
217 |
ccttggattcaggtgctatccccattacaggaacactcataagacctactgttccagcaacatagtaacaataaaggtagagctcatcaaaattgt |
312 |
Q |
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| T |
39518061 |
ccttggattcaggtgctatccccattacaggaacactcataagacctactgttccagcaacatagtaacaataaaggtagagctcatcaaaattgt |
39518156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 307
Target Start/End: Original strand, 32687427 - 32687610
Alignment:
| Q |
124 |
gaacttactcttctccaacatctctgagtatattggtgagttgatttgcaattcctagtgccaatgctgcattataaatgctctctgttgaagccttgga |
223 |
Q |
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|||||||||| |||||||||||||||||||| ||||| || |||||||||||||| | ||||| || ||||| || | |||||||||| || | || |
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| T |
32687427 |
gaacttactcctctccaacatctctgagtatgttggtaagctgatttgcaattcccaaggccaaggcagcattgtatacactctctgttgtggcttgcga |
32687526 |
T |
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| Q |
224 |
ttcaggtgctatccccattacaggaacactcataagacctactgttccagcaacatagtaacaataaaggtagagctcatcaaa |
307 |
Q |
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| T |
32687527 |
atgtgttgaaatgcccatgaccggaacactcattaaaccaacagttccagcaacatagtaacagtagagatatagttcatcaaa |
32687610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 125 - 307
Target Start/End: Original strand, 17380461 - 17380643
Alignment:
| Q |
125 |
aacttactcttctccaacatctctgagtatattggtgagttgatttgcaattcctagtgccaatgctgcattataaatgctctctgttgaagccttggat |
224 |
Q |
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|||||||||||||||||| ||||| ||||| ||||| |||||||| ||||| || ||||||||||| ||||| || ||||| || |||||||| || ||| |
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| T |
17380461 |
aacttactcttctccaacgtctctaagtatgttggtaagttgattagcaatgccaagtgccaatgcagcattgtagatgctttcagttgaagcttttgat |
17380560 |
T |
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| Q |
225 |
tcaggtgctatccccattacaggaacactcataagacctactgttccagcaacatagtaacaataaaggtagagctcatcaaa |
307 |
Q |
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| ||| |||| ||||||||||||||||||||||| || || || |||||||||||||| ||||| ||||| || |||||||| |
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| T |
17380561 |
tgtggttctatgcccattacaggaacactcataaggcccacagtcccagcaacatagtagcaatataggtatagttcatcaaa |
17380643 |
T |
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