View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7280_low_13 (Length: 257)
Name: NF7280_low_13
Description: NF7280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7280_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 2764814 - 2765046
Alignment:
| Q |
7 |
agtttggagttagttaagttgtttatctttattatctttttcattttcatattcaatcatgtataaatagggtgtcttttatttattattatcaattgat |
106 |
Q |
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| T |
2764814 |
agtttagagttagttaagttgtgtatctttatgatctttttcattttcatattcaatcatgtataaatagggtgtcttttatttattattatcaattgat |
2764913 |
T |
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| Q |
107 |
caagttatcaataaatgagatagtttagaaatacctgaagttccatacacctatcaagaataggtagagaaaaagtgtaggcaaaatcaactctgggaag |
206 |
Q |
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| T |
2764914 |
caagttatcaataaatgagatagtttagaaatacctgaagttccatacacctatcaagaataggtagagaaaaagtgtaggcaaaatcaactctgggaag |
2765013 |
T |
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| Q |
207 |
caaaccaacatgagaaacaacacatgaacaagg |
239 |
Q |
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| T |
2765014 |
caaaccaacatgagaaacaacacatgaacaagg |
2765046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 37067994 - 37067888
Alignment:
| Q |
37 |
attatctttttcattttcatattcaatcatgtataaatagggtgtcttttatttattatta-tcaattgatcaagttatcaataaatgagatagtttaga |
135 |
Q |
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| T |
37067994 |
attatcttcttcattatcatatggactcatgtgtaaatagagtc-cttgtattcataattaatcaattgatcaagttatcaataaatgagatattttagt |
37067896 |
T |
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| Q |
136 |
aatacctg |
143 |
Q |
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| T |
37067895 |
aatacctg |
37067888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 37060458 - 37060412
Alignment:
| Q |
97 |
atcaattgatcaagttatcaataaatgagatagtttagaaatacctg |
143 |
Q |
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| T |
37060458 |
atcaattggtcaagttatcaataaatgagatattttagtaatacctg |
37060412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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