View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7280_low_2 (Length: 501)
Name: NF7280_low_2
Description: NF7280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7280_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 30 - 490
Target Start/End: Complemental strand, 38465849 - 38465385
Alignment:
| Q |
30 |
gcaacccacaaaaaggataattctatttgttaaataaaagaataaataaatattctattatccaaacaaaacgatagaacagaatatggaacatgaagtt |
129 |
Q |
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| T |
38465849 |
gcaacccacaaaaaggataattctatttgttaaataaaagaataaataaatattctattatccaaacaaaatgatagaacagaatatggaacatgaagtt |
38465750 |
T |
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| Q |
130 |
tgtgtgaatatgctattcatgcacttcttgtttcttatatgcctctcttacttcattatcctcttattaacaacattttaaaacaactacaattcatttc |
229 |
Q |
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| T |
38465749 |
tgtgtgaatatgctattcatgcacttattgtttcttatatgcctctcttacttcattatcctcttattgacaacattttaaaacaactacaattcatttc |
38465650 |
T |
|
| Q |
230 |
attgcatataaattagtgtcacatg-aactcaaaacaacattcacaaatggaaactaatgttttcaggcagaacagaatttcaacacaaactt---caac |
325 |
Q |
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| T |
38465649 |
attgcatataaattagtgtcacatgaaactcaaaacaacattcacaaatggaaactaatgttttcaggcagaacagaatttcaacactaacttcaacaac |
38465550 |
T |
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| Q |
326 |
tcactacaacctcatcaaacatccaccttctatagtttctgtgctcagaaagccttcaaatcatgacattacagaagaaacagcaaaaagtgtctacaaa |
425 |
Q |
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| T |
38465549 |
tcactacaacctcatcaaacatccaccttctatagtttctgtgctcagaaagccttcaaatcatgacattacagaagaaacagcaaaaagtgtctacaaa |
38465450 |
T |
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| Q |
426 |
gataactggtttgatctgatagcaataaaccatttatcaaaaacagttcaagctgccacaggttc |
490 |
Q |
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| T |
38465449 |
gataactggtttgatctgatagcaataaaccatttatcaaaaacagttcaagctgccacaggttc |
38465385 |
T |
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