View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7280_low_3 (Length: 431)
Name: NF7280_low_3
Description: NF7280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7280_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 416
Target Start/End: Complemental strand, 3884583 - 3884176
Alignment:
| Q |
9 |
ggacatcagaattcaagggactgcaaagttttgtagataaatttagaagggaattggagtttctaatatatgctaaagaaaattataacttcaggagtat |
108 |
Q |
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| T |
3884583 |
ggacaccagaattcaagggactgcaaagttttgtagataaatttagaagggaattggagtttctaatatatgctaaagaaaattataacttcaggagtat |
3884484 |
T |
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| Q |
109 |
acagaaaggcaagggcaaaaatatcaatcacatgatggaagaagggcttacctgatagccaccaataactaagaggttacaatatcccggatgaaatatg |
208 |
Q |
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| T |
3884483 |
tcagaaaggcaagggcaaaaatatcaatcacatgatggaagaagggcttacctgatagccaccaataactaagaggttacaatatcccggatgaaatatg |
3884384 |
T |
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| Q |
209 |
cacgattgaaacttgttcccgtttgaatgcaactcgccgatgcattctccgtccgaccagactcgtgcacaatcttcactgacagaggcaatatactttc |
308 |
Q |
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| T |
3884383 |
cacgattgaaacttgttcccgtttgaatgcaactcgccgatgcattctccgttcgaccagactcgtgcacaatcttcactgacagaggcaatatactttc |
3884284 |
T |
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| Q |
309 |
ccgttctatcccaacaaatggaaagaacatctttatcatgtccctaaaatgaaacaaaattcagttatgatagtatgttacaaaacacaacattcaagcg |
408 |
Q |
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| T |
3884283 |
ccgttctatcccaacaaatggaaagaacatctttatcatgtccctaaaaggaaacaaaattcagttatgatagtatgttgcaaaacacaacattcaagcg |
3884184 |
T |
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| Q |
409 |
gtgaaatg |
416 |
Q |
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| T |
3884183 |
gtgaaatg |
3884176 |
T |
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Back To:
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 35240794 - 35240846
Alignment:
| Q |
248 |
atgcattctccgtccgaccagactcgtgcacaatcttcactgacagaggcaat |
300 |
Q |
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| T |
35240794 |
atgcattgtccgtccgaccagacacgtacatcatcttcactgacagaggcaat |
35240846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 35237790 - 35237828
Alignment:
| Q |
262 |
cgaccagactcgtgcacaatcttcactgacagaggcaat |
300 |
Q |
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| T |
35237790 |
cgaccagacacgtgcacaatcttcagtgacagaggcaat |
35237828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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