View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7280_low_8 (Length: 345)
Name: NF7280_low_8
Description: NF7280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7280_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 37316249 - 37316558
Alignment:
| Q |
20 |
gttttggctgcatcaagggcagttagaactcctagttgttcacgagccatggatagatttttaaggtagagtgaccaattgagtctttggtaatagtgtg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37316249 |
gttttggctgcatcaagggcagttagaactcctagttgttcacgagccatggatagatttttaaggtagagtgaccaattgagtctttggtaatagtgtg |
37316348 |
T |
|
| Q |
120 |
ctccaaagaccaattagtggtgactataattctggcagaagaaggaataacaagttagtattatataggtgtttcagtaccacgctatcaagtgactttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37316349 |
ctccaaagaccaattagtggtgactataattctggcagaagaaggaataacaagttagtattatataggtgtttcagtgccacgctatcaagtgactttt |
37316448 |
T |
|
| Q |
220 |
tgttgaagtttactaaaatcacaaactcatgaataaacgctataagttagttagtgggaaaagccctattcgctagaaccattttggacttgtcaaagcc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37316449 |
tgttgaagtttactaaaatcacaaactcatgaataaacgctataagttagttagttggaaaagccctattcgctagaaccattttggacttgtcaaagcc |
37316548 |
T |
|
| Q |
320 |
ctcgtgtgtg |
329 |
Q |
| |
|
||| |||||| |
|
|
| T |
37316549 |
ctcatgtgtg |
37316558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 19207041 - 19206901
Alignment:
| Q |
20 |
gttttggctgcatcaagggcagttagaactcctagttgttcacgagccatggatagatttttaaggtagagtgaccaattgagtctttggtaatagtgtg |
119 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||| |||||| |||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
19207041 |
gttttggctgcatgaagagaagttagaactcctagctgttcatgagccaagg-tagattttgaaggtggagtgaccaattgagtctttggttatagtgtg |
19206943 |
T |
|
| Q |
120 |
ctccaaagaccaattagtggtgactataattctggcagaagaaggaa |
166 |
Q |
| |
|
||||||| || ||||||||||||| |||||| ||||||||||| |
|
|
| T |
19206942 |
ctccaaacac----tagtggtgactat-gttctggtagaagaaggaa |
19206901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University