View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7281_high_11 (Length: 242)
Name: NF7281_high_11
Description: NF7281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7281_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 48894182 - 48893972
Alignment:
| Q |
20 |
ggtgctggtagtgctactgttgtaggtggaaattccaatggtttaggaggttttcctgcaggatccactgcatctattccaaatggtggtattgttactg |
119 |
Q |
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| T |
48894182 |
ggtgctggtagtgctactgttgtaggtggaaattccaatggtttaggaggttttcctgcaggatccactgcatctattccaaatggtggttttgttactg |
48894083 |
T |
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| Q |
120 |
gccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatccatcttcattgatgaacatgcaggcaaggcatgctatgcagcaacagcc |
219 |
Q |
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| T |
48894082 |
gccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatccatcttcattgatgaacatgcaggcaaggcatgctatgcagcaacagcc |
48893983 |
T |
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| Q |
220 |
tcagatgatgt |
230 |
Q |
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| T |
48893982 |
tcagatgatgt |
48893972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 76 - 230
Target Start/End: Complemental strand, 24743001 - 24742847
Alignment:
| Q |
76 |
tgcaggatccactgcatctattccaaatggtggtattgttactggccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatccatct |
175 |
Q |
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| T |
24743001 |
tgcaggatcctttgcagctattccaaatggtggttttgttactggccaatatccatcatctatgctaatgaacatgaatggtttcaataaccatccattt |
24742902 |
T |
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| Q |
176 |
tcattgatgaacatgcaggcaaggcatgctatgcagcaacagcctcagatgatgt |
230 |
Q |
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| T |
24742901 |
tcattgatgaacatgctggcaaggcatgctatgcagcaacagcctcagatgatgt |
24742847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 10654674 - 10654786
Alignment:
| Q |
103 |
tggtggtattgttactggccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatccatcttcattgatgaacatgcaggcaaggcat |
202 |
Q |
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| T |
10654674 |
tggtggttttgttactggccaatatccatcatctatgttaatgaacatgaatggtttcaataaccatccatcttcattgatgaacatgctggcaaggcat |
10654773 |
T |
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| Q |
203 |
gctatgcagcaac |
215 |
Q |
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| T |
10654774 |
gctatgcagcaac |
10654786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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