View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7281_high_2 (Length: 420)
Name: NF7281_high_2
Description: NF7281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7281_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 9097487 - 9097888
Alignment:
| Q |
19 |
agaaatcagtgtcgcagtcgcagcacctccttctcctgaaaccaactgtctgtcatgctgtctgcctcactgcttcaacctggtttgtttcattatcttc |
118 |
Q |
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| T |
9097487 |
agaaatcagtgtcgcagtcgcagcacttccttctcctgaacccaactgtctgtcatgctgtctgcctcactgcttcaacctggtttgtttcattatcttc |
9097586 |
T |
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| Q |
119 |
taatttatcacttgtaatcatatatcttcaatttttgtattctttttacaatttctgggatcatcaatcaaattatcactgcttctatacaattattatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9097587 |
taatttatcacttgtaatcatatatcttcaatttttgtattccttttacaatttctgggatcatcaatcaaattatcactgcttctatacaattattatt |
9097686 |
T |
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| Q |
219 |
aagtttttgtgtcggtgctctgttagttctttctttgtcgaatatgcaaattcataattcgcttgttcacactggttttactgtgccaaatatatttcag |
318 |
Q |
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| T |
9097687 |
aagtttttgtgtcggtgctctgttagttctttctttgtcaaatatgcaaattcataattcgcttgttcacactggttttactgtgccaaatatatttcag |
9097786 |
T |
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| Q |
319 |
tagttagttacatgacctatgaagctcaaatactcctaggattaggcgtgtccggtgttggacatacccacagcggcgcatataattatattgaattatg |
418 |
Q |
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| T |
9097787 |
tagttagttacatgacctatgaagctcagatactccttggattaggcgtgtccggtgttggacataccgacaccggcacatataattatattgaattatg |
9097886 |
T |
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| Q |
419 |
tc |
420 |
Q |
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|| |
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| T |
9097887 |
tc |
9097888 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 376
Target Start/End: Original strand, 11596396 - 11596439
Alignment:
| Q |
333 |
acctatgaagctcaaatactcctaggattaggcgtgtccggtgt |
376 |
Q |
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| T |
11596396 |
acctatgaagcacaaatactcctcggattaggcgtgtccagtgt |
11596439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 371
Target Start/End: Original strand, 36314578 - 36314616
Alignment:
| Q |
333 |
acctatgaagctcaaatactcctaggattaggcgtgtcc |
371 |
Q |
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| T |
36314578 |
acctatgaagcacatatactcctaggattaggcgtgtcc |
36314616 |
T |
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