View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7281_high_8 (Length: 261)
Name: NF7281_high_8
Description: NF7281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7281_high_8 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0107 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 38 - 261
Target Start/End: Complemental strand, 22211375 - 22211162
Alignment:
| Q |
38 |
tttgagtttctgagacaaaacaaacacagggctaccatataattgactactccaaacatcttcaattatcttgatgtaatcttcatgagtagtccacatc |
137 |
Q |
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| T |
22211375 |
tttgagtttcggagacaaaacaaacatagggctaccatataattgactactccaaa----------tatcttgatgcaatcttcatgagtagtgcacatc |
22211286 |
T |
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| Q |
138 |
ttcataaatttaaattgagaaacaaaagagattggactgatttgaaattctaaaagaagagggttgtgatctgacttatgcctgagaagagtggaaacat |
237 |
Q |
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| T |
22211285 |
ttcataaatttaaattgagaaacaaaagagattggactgatttgaaattctaaaagaagagggttgtgatctgacttatgcctgagaagagtgcaaacat |
22211186 |
T |
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| Q |
238 |
tgatggaagagcataaatccagcc |
261 |
Q |
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| T |
22211185 |
tgatggaagagaataaatccagcc |
22211162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 22211425 - 22211391
Alignment:
| Q |
9 |
acatcaccaaatgtttgtttattccatgttttgag |
43 |
Q |
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| T |
22211425 |
acattaccaaatgtttgtttattccatgttttgag |
22211391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 38 - 261
Target Start/End: Complemental strand, 18489 - 18267
Alignment:
| Q |
38 |
tttgagtttctgagacaaaacaaacacagggctaccatataattgactactccaaacatcttcaattatcttgatgtaatcttcatgagtagtccacatc |
137 |
Q |
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| T |
18489 |
tttgagtttctgagacaaaacaaacatagggcttccatacaattgagtactccaaacatcttcaattatcttgatacaatcatcatgagtagtccacatc |
18390 |
T |
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| Q |
138 |
ttcataaatttaaattgagaaacaaaagagattggactgatttgaaattctaaaagaagagggttgtgatctgacttatgcctgagaagagtggaaacat |
237 |
Q |
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| T |
18389 |
ttcataaatttaaattgagatgcaaaagtgaatggactggtttggaattctaagaggagagggttgtgatctgacttatgcctgagaagagtgg-aacat |
18291 |
T |
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| Q |
238 |
tgatggaagagcataaatccagcc |
261 |
Q |
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| T |
18290 |
tgatggaagagcataaatccagcc |
18267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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