View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7281_low_1 (Length: 496)
Name: NF7281_low_1
Description: NF7281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7281_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 56 - 480
Target Start/End: Original strand, 40662578 - 40663001
Alignment:
| Q |
56 |
ctaaatggacacacattcctaaaactaaggttaactacatactccatcaataatacggatcggaaacgggtttggtacagtttacaccgtgcaatagaat |
155 |
Q |
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| T |
40662578 |
ctaaatggacacacattcctaaaactaagggtaactacatactccatcaataatacg-atcggaaacgggtttggtacagtttacaccgtgcaatagaat |
40662676 |
T |
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| Q |
156 |
ccaagatgttgtgttgtagatattttgtgaaatttcaaggctaagagggtagcaaatcacctccaaaaggtaatggttgtataagaatatgaaatgatgc |
255 |
Q |
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| T |
40662677 |
ccaagatgttgtgctgcagatattttgtgaaatttcaaagctaagagggtagcaaatcacctccaaaaggtaatggttgtataagaatatgaaatgatgc |
40662776 |
T |
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| Q |
256 |
ttgaaactatacgaagtcgatagagcaagcccaaattccacctttccatgtttccggcggctgagatcaacatccgagtttcatctcaacaacgttgctg |
355 |
Q |
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| T |
40662777 |
ttgaaactatacgaagtcgatagagcaagcccaaattccacctttccatgtttccggcggctgagatcaacatccgagtttcatctcaacaacgttgctg |
40662876 |
T |
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| Q |
356 |
ctgtggttgaaagatgactgcagaagtgatgtgtcgagaatgatctgttgatccttgtaaaatatcttgggatcaaatgaatcgtggtggtatgagattc |
455 |
Q |
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| T |
40662877 |
ctgtggttgaaagatgactgcagaagtgatgtgtcgagaatgatctgttgatccttgtaaaatatcttgggatcaaatgaatcgtggtggtatgagattc |
40662976 |
T |
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| Q |
456 |
gcaaatggtggttagggtttgatag |
480 |
Q |
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| T |
40662977 |
gcaaatggtagttagggtttgatag |
40663001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 40662503 - 40662560
Alignment:
| Q |
13 |
atcttgaaatataaataattcatacataaattgagatcacaagctaaatggacacaca |
70 |
Q |
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| T |
40662503 |
atcttgaactataaataattcatacataaattgagatcacaagctaaatgaacacaca |
40662560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 479
Target Start/End: Original strand, 40658741 - 40658781
Alignment:
| Q |
439 |
gtggtggtatgagattcgcaaatggtggttagggtttgata |
479 |
Q |
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| T |
40658741 |
gtggtggtatgagattcgcaaatagtggttggggtttgata |
40658781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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