View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7281_low_3 (Length: 414)
Name: NF7281_low_3
Description: NF7281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7281_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 47401633 - 47401279
Alignment:
| Q |
13 |
gttgaagaggtgaagatgattttgtctgacatgttccaannnnnnnnnaggagaggcctgcattggcctaaaattaaatagcctaaaattacaaatgaaa |
112 |
Q |
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| T |
47401633 |
gttgaagaggtgaagatgattttgtctgacatgttccaatttttttt-aggagaggcctgcattggcctaaaattaaatagcctaaaattacaaatgaaa |
47401535 |
T |
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| Q |
113 |
aagtgttatagtgcaaattaaaatatttcttatggtaggagaattatttcaaacgataaatgaatgaaaaattaggttcgttggaaaatttctcaagaat |
212 |
Q |
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| T |
47401534 |
aagtgttatagtgcaaattaaaatatttcttatggtaggagaattatttcaaacgataaatgaatgaaaaattaggttcgttggaaaatttctcaagaat |
47401435 |
T |
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| Q |
213 |
tatgttatgcttaaatacgttgcattaaacagtaattctatttaatttgtgttcctttcgnnnnnnnnnnnnnnnnttgtgttatgaatggtggtataat |
312 |
Q |
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| T |
47401434 |
tatgttatgcttaaatacgttgcattaaacagtaattctatttaatttgtgttcctttcgaaaaagaaaaaaaaaattgtgttatgaatggtggtataat |
47401335 |
T |
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| Q |
313 |
tatttttaacgttaaacattatgaaaaaaatacttgctctcaaaatatctcagaatt |
369 |
Q |
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| T |
47401334 |
tatttttaacgttaaacattatg-aaaaaatacttgctctcaaaatatctcagaatt |
47401279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 47401026 - 47400946
Alignment:
| Q |
91 |
tagcctaaaattacaaatgaaaaagtgttatagtgcaaattaaaatatttcttatggtaggagaattatttcaaacgataa |
171 |
Q |
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| T |
47401026 |
tagcctaaaattacaaacgaaaaagtgttatagtgcaactcaaaatattttttgcagtgggaaaattatttcaaaagataa |
47400946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 47400827 - 47400787
Alignment:
| Q |
300 |
atggtggtataattatttttaacgttaaacattatgaaaaa |
340 |
Q |
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| T |
47400827 |
atggtggtataattatttttaacgttaaccattatgaaaaa |
47400787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 28138273 - 28138307
Alignment:
| Q |
13 |
gttgaagaggtgaagatgattttgtctgacatgtt |
47 |
Q |
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| T |
28138273 |
gttgaagaggtgaagatgattttgtgtgacatgtt |
28138307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 2656796 - 2656762
Alignment:
| Q |
13 |
gttgaagaggtgaagatgattttgtctgacatgtt |
47 |
Q |
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| T |
2656796 |
gttgaagaggtgaatatgattttgtctgacatgtt |
2656762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 43113404 - 43113370
Alignment:
| Q |
13 |
gttgaagaggtgaagatgattttgtctgacatgtt |
47 |
Q |
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| T |
43113404 |
gttgaagaggtgaagatgattttgtctaacatgtt |
43113370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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