View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7281_low_5 (Length: 349)
Name: NF7281_low_5
Description: NF7281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7281_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 25410593 - 25410278
Alignment:
| Q |
19 |
tgagtgggaggtgcagcccgtcttgtgttgccaacggtaaggtct-gaggtggtggtttgcccggggttgagtgggggttcgctgcctttacctgtccgg |
117 |
Q |
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| T |
25410593 |
tgagtgggaggtgcagcccgtcttgtgttgccaacggtaaggtgttgaggtggtggttttcccggggttgagtgggggttcgctgcctttacctgtccgg |
25410494 |
T |
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| Q |
118 |
cctggcgtcctgggtttctctttttgttcttttttccgtgcaggtttgcgttcggtatgtggtgtctccctttggagatgcttcgtgggtggtttcgttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
25410493 |
cctggcgtcctgggtttctctttttgttcttttttccgtgcaggttttcgtttggtgtgtggtgtctccctttggaggtgcttcgtgggtggtttccttt |
25410394 |
T |
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| Q |
218 |
tttctttgttgttgtagtttttggtgatgcctttggagtgtttctctgtcctcacatgtgggggtagggtgttaccctacgggtattttagcaggctgtc |
317 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25410393 |
tttctttgttgttgtagtttttggtggtgccttcggagtgtttctctatcctcacctgtgggggtagggtgttaccctacgggtattttagcaggccgtc |
25410294 |
T |
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| Q |
318 |
tctaggcgacctcctg |
333 |
Q |
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| T |
25410293 |
tccaggcgacctcctg |
25410278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 41927168 - 41927286
Alignment:
| Q |
81 |
ggggttgagtgggggttcgctgcctttacctgtccggcctggcgtcctgggtttctctttttgttcttttttccgtgcaggtttgcgttcggtatgtggt |
180 |
Q |
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||||||| ||||||||||||||||| ||||| |||||| || | |||||| ||||||||| |||||||||| | || || |||| |||||| |||||| |
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| T |
41927168 |
ggggttgggtgggggttcgctgcctctacctttccggcatgtcttcctggttttctctttgtgttcttttt-ctttggagacttgctttcggtgtgtggt |
41927266 |
T |
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| Q |
181 |
gtctccctttggagatgctt |
200 |
Q |
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|||||||||||||| ||||| |
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| T |
41927267 |
gtctccctttggaggtgctt |
41927286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 10994506 - 10994534
Alignment:
| Q |
19 |
tgagtgggaggtgcagcccgtcttgtgtt |
47 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10994506 |
tgagtgggaggtgcagcccgtcttgtgtt |
10994534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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