View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7281_low_8 (Length: 282)
Name: NF7281_low_8
Description: NF7281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7281_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 24350398 - 24350140
Alignment:
| Q |
17 |
caaaatcacaatgaactgacttgagacaagcaacaccgtctaacaggtatttgaatgaattgnnnnnnnn------ccttattgagtgaattgaaaaaag |
110 |
Q |
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| T |
24350398 |
caaaatcacaatgaactgacttgagacaagcaacaccgtctaacaggtatttgagtgaattgaaaaaaaaaaaaaaccttattgagtgaattgaaaaaaa |
24350299 |
T |
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| Q |
111 |
acgagtccacattacacatatgactatttggtttgaaataatgttacgtggtgttttaagtttattttatccttgtatttctattaaatacattagttca |
210 |
Q |
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| T |
24350298 |
a-gagtccacattacacatatgactatttggtttgaaataatgttacgtggtgttttaagtttattttatccttgtatttctattaaatacattagttca |
24350200 |
T |
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| Q |
211 |
attattaaataagaagttgtttcagagattgtgatttagctcaaaaataattgctttgat |
270 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24350199 |
attattaaagaagacgttgtttcagagattgtgatttagctcaaaaataattgctttgat |
24350140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 12156192 - 12156246
Alignment:
| Q |
17 |
caaaatcacaatgaactgacttgagacaagcaacaccgtctaacaggtatttgaa |
71 |
Q |
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| T |
12156192 |
caaaatcacaatgaactggcttgaaacaagcaacaacgtctaacaggtatttgaa |
12156246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 52635596 - 52635640
Alignment:
| Q |
17 |
caaaatcacaatgaactgacttgagacaagcaacaccgtctaaca |
61 |
Q |
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| T |
52635596 |
caaaatcacaatgaactggcttgaaacaagcaacaccgtctaaca |
52635640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 55728577 - 55728621
Alignment:
| Q |
17 |
caaaatcacaatgaactgacttgagacaagcaacaccgtctaaca |
61 |
Q |
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| T |
55728577 |
caaaatcacaatgaactggcttgaaacaagcaacaccgtctaaca |
55728621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 14351393 - 14351349
Alignment:
| Q |
27 |
atgaactgacttgagacaagcaacaccgtctaacaggtatttgaa |
71 |
Q |
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| T |
14351393 |
atgaactggcttgaaacaagcaacatcgtctaacaggtatttgaa |
14351349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 14951049 - 14950995
Alignment:
| Q |
17 |
caaaatcacaatgaactgacttgagacaagcaacaccgtctaacaggtatttgaa |
71 |
Q |
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||||||||||||||| || ||||| ||||||||||| |||||||| || |||||| |
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| T |
14951049 |
caaaatcacaatgaattggcttgaaacaagcaacacagtctaacacgtgtttgaa |
14950995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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