View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7282_high_1 (Length: 468)
Name: NF7282_high_1
Description: NF7282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7282_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 420
Target Start/End: Complemental strand, 2468178 - 2467778
Alignment:
| Q |
11 |
agcagaacctgtgcttaagtcaccgacatctccaaatataggaattgaattcaaaccagtagcaaaatcagaagcagcaactgccggaaaagcatcttga |
110 |
Q |
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| T |
2468178 |
agcaaaacctgtgcttaagtcaccgacatctccaaatataggaattgaattcaaaccagtagcaaaatcagaagcagcaactgccggaaaagcatcttga |
2468079 |
T |
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| Q |
111 |
agtgcgaagaacgcagagaacagcataaacttcaaaactgtcatggatgcatcatcattatcatcagaagacacattctgtgttgccaattggcattgag |
210 |
Q |
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| T |
2468078 |
agtgcgaagaacgcggagaacagcataaacttcaaaactgtcatggatgcatcatca---------gaagacacattctgtgttgccaattggcattgag |
2467988 |
T |
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| Q |
211 |
aatcggaattttcggcaacagagtcatcctcggaagcacgaacgaatccctatacgaaaatgaaaataaatttgaggcattgaattgaatgaaatgaagt |
310 |
Q |
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| T |
2467987 |
aatcggaattttcggcaacagagtcatcctcggaagcacgaacgaatccctatacgaaaatgaaaataaatttgaggcattgaattgaatgaaatgaagt |
2467888 |
T |
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| Q |
311 |
tgaagataggttcaggaaattaccgttgtagcccgaaaaatgttggtgaattgaaagcgtggtggtaatttgagattgcagcgaggagtaggagggggga |
410 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2467887 |
tgaagataggttcaggaaattaccgttgtagaccgaaaaatgttggtgaattgaaagcgtggtggtaatttgagattgcagcgaggagtaggagggggaa |
2467788 |
T |
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| Q |
411 |
aaatggaaga |
420 |
Q |
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| T |
2467787 |
aaatggaaga |
2467778 |
T |
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