View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7283_high_2 (Length: 274)
Name: NF7283_high_2
Description: NF7283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7283_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 115 - 265
Target Start/End: Original strand, 43566149 - 43566299
Alignment:
| Q |
115 |
ggaacggcgccgatgctttcgactagaattccatgcaaatccagtattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgt |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43566149 |
ggaacggcgccgatgctttcgaccagaattccatgcaaatccactattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgt |
43566248 |
T |
|
| Q |
215 |
ttctcttgttcttcaagagagaaatcatgtaacttcattctgtattcatct |
265 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
43566249 |
ttctcttgttcttcaagggagaaatcatttaacttcattctgtattcatct |
43566299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 115 - 265
Target Start/End: Complemental strand, 43474098 - 43473948
Alignment:
| Q |
115 |
ggaacggcgccgatgctttcgactagaattccatgcaaatccagtattccaaatacgcctatttttgtagtctaaggcgatgaatttggaaacggtttgt |
214 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
43474098 |
ggaacggcgcagacgcttttgactagaattccatgcaaatccatgactccgaatacgcctatttttgtagtctaaggcgatgaagttgaaaacggtttgt |
43473999 |
T |
|
| Q |
215 |
ttctcttgttcttcaagagagaaatcatgtaacttcattctgtattcatct |
265 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43473998 |
ttctcttcttcttcaagagagaaatcatgtaacttcattctatattcatct |
43473948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 43562035 - 43562085
Alignment:
| Q |
20 |
caaaacacacccattggggtttgaactgatgactaacatcacacattccaa |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43562035 |
caaaacacacccattggggtttgaactgatgactaacatcacacattccaa |
43562085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University