View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7283_high_4 (Length: 240)
Name: NF7283_high_4
Description: NF7283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7283_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 41614266 - 41614486
Alignment:
| Q |
4 |
gaaaccctaagaattgtaaaataataacaaccaaaatagttattagaaacgaaattttaaatcttattaagggaaaccttaaggaattaagaactatatg |
103 |
Q |
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| T |
41614266 |
gaaaccctaagaattgtaaaataataacaaccaaaatagttactagaaacgaaattttaaatcttattaagggaaaccttaaggaactaagaactatatg |
41614365 |
T |
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| Q |
104 |
ggaagaaagaaattttcatattagcatagaagaacggttagatgaagtatgttcagataaccctctagacagtcttaagaacactaatcatgaattaata |
203 |
Q |
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|||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41614366 |
ggaagaaagaaattttcatattagtatagaagaaagattagatgaagtatgttcagataatcctctagacagtcttaagaacactaatcatgaattaata |
41614465 |
T |
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| Q |
204 |
gttattaaacttaaaaaccct |
224 |
Q |
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||||||||||||||||||||| |
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| T |
41614466 |
gttattaaacttaaaaaccct |
41614486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2618084 - 2618311
Alignment:
| Q |
1 |
taggaaaccctaagaattgtaaaataataacaaccaaaatagttattagaaacgaaattttaaatcttattaagggaaaccttaaggaattaagaactat |
100 |
Q |
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||||||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2618084 |
taggaaaccctaataatagtaaaatagtaacaaccaaaatagttactagaaacgaaattttaaatcttattaagggaaaccttaaggaattaagaaccat |
2618183 |
T |
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| Q |
101 |
atgggaagaaagaaattttcatattagcatagaagaacggttagatgaagtatgttcagataaccctctagacagtcttaagaacactaatcatgaatta |
200 |
Q |
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| T |
2618184 |
atgggaagaaagaaattttcatattagcatagaagaaagattagatgaagtttgttcatataaccctctagacagtcttaagaacactaatcatgaatta |
2618283 |
T |
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| Q |
201 |
atagttattaaacttaaaaaccctgatg |
228 |
Q |
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| T |
2618284 |
ctagttattaaacttaaaaaccctgatg |
2618311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 56467254 - 56467430
Alignment:
| Q |
3 |
ggaaaccctaagaattgtaaaataataacaaccaaaatagttattagaaacgaaattttaaatcttattaagggaaaccttaaggaattaagaactatat |
102 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56467254 |
ggaaaccttaagaattgtaaaataataacaaccaaaatagttactagaaacgaaattttaaatcttattaagggaaaccttaaggaattaagaactatat |
56467353 |
T |
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| Q |
103 |
gggaagaaagaaattttcatattagcatagaagaacggttagatgaagtatgttcagataaccctctagacagtctt |
179 |
Q |
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| T |
56467354 |
gggaagaaagaaattttcatattagcatagaagaaagattatacgaagtctgttcagataaccctctagacagtctt |
56467430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 61 - 224
Target Start/End: Complemental strand, 22428933 - 22428770
Alignment:
| Q |
61 |
taaatcttattaagggaaaccttaaggaattaagaactatatgggaagaaagaaattttcatattagcatagaagaacggttagatgaagtatgttcaga |
160 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |||||||| |
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| T |
22428933 |
taaatcttattaagggaaaccctaaggaattaagaattatatgggaagaaagaaatttccatattagcatagaagaaagattagatgaagtttgttcaga |
22428834 |
T |
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| Q |
161 |
taaccctctagacagtcttaagaacactaatcatgaattaatagttattaaacttaaaaaccct |
224 |
Q |
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|||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22428833 |
taacccactagacagccttaagaacactgatcatgaattaatagttattaaacttaaaaaccct |
22428770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 22429315 - 22429250
Alignment:
| Q |
4 |
gaaaccctaagaattgtaaaataataacaaccaaaatagttattagaaacgaaattttaaatctta |
69 |
Q |
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|||||||||||||| ||| |||| |||| ||||||||||||| |||||| || ||||||||||||| |
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| T |
22429315 |
gaaaccctaagaatagtagaatagtaaccaccaaaatagttactagaaatgagattttaaatctta |
22429250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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