View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7283_high_5 (Length: 236)
Name: NF7283_high_5
Description: NF7283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7283_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 4591382 - 4591233
Alignment:
| Q |
15 |
caactctccataatcactaaaacttatatcaaaatcaaatatatccaccaactcatgttgattttgatttgtgatatttaatttagcagctcgaatcgtt |
114 |
Q |
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| T |
4591382 |
caactctccctaatcactaaaacttatatcaaaatcaaatatatccaccaactcatgttgattttgatttgtgatatttaatttagcagctcgaatcgtt |
4591283 |
T |
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| Q |
115 |
accccagaagcacgaagccttgtagcacaatataacaattctagctttgc |
164 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4591282 |
accccagaagcacgaagctttgtagcacaatataacaattctagctttgc |
4591233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 4620914 - 4620789
Alignment:
| Q |
15 |
caactctccataatcactaaaacttatatcaaaatcaaatatatccaccaactcatgttgattttgatttgtgatatttaatttagcagctcgaatcgtt |
114 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||| ||||||||| || |
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| T |
4620914 |
caactctccagaatcactaaaacttatatcaaaatcaaacatatccaccaacttatgctgattttgatttgtgctatttaattt---agctcgaattatt |
4620818 |
T |
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| Q |
115 |
accccagaagcacgaagccttgtagcaca |
143 |
Q |
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|||||||||||||| ||| |||||||||| |
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| T |
4620817 |
accccagaagcacggagctttgtagcaca |
4620789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 4555081 - 4554995
Alignment:
| Q |
15 |
caactctccataatcactaaaacttatatcaaaatcaaatatatccaccaactcatgttgattttgatttgtgatatttaatttagc |
101 |
Q |
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|||||| ||| ||||||||||||| | |||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||| |
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| T |
4555081 |
caactccccaaaatcactaaaactcacatcaaaatcaaacatatccaccaacttctgttgagattgatttgtgctatttaatttagc |
4554995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 4591206 - 4591161
Alignment:
| Q |
191 |
gttccactgtagatatgtgcatcaaattaagtatatgagcacctcc |
236 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4591206 |
gttccactgtagacatgtgcatcaaattaagtatatgagcacctcc |
4591161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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