View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7283_low_2 (Length: 410)
Name: NF7283_low_2
Description: NF7283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7283_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 4 - 392
Target Start/End: Original strand, 15153098 - 15153486
Alignment:
| Q |
4 |
cgaagaatatgatccacatagaagacatctagctacgcgagaatatcatggatgtgacgaaccatcaaataagagggacgtctaacattacacccgccat |
103 |
Q |
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| T |
15153098 |
cgaaaaatatgatccacatagaagacgtctagctacgcgagaatatcatggatgtgacgaaccatcaaataagagggacgtctaacattacacccgccaa |
15153197 |
T |
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| Q |
104 |
gaatcaaattcagtgcaacctttgaatcaaatttaatgtcaatatctctaaaacccaactttaaccccatgtaaatagtaatggagcaagcaagaagata |
203 |
Q |
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| T |
15153198 |
gaatcaaattcagtgcaacctttgaatcaaatttaatgtcaatatctctaaaactcaactttaaccccatgtaaatagtaatggagcaagcaagaagata |
15153297 |
T |
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| Q |
204 |
attgaaccagcatagccaaaaatgaaaatttcagtacggtcaccaacactccttaacaagcagcaatggcaccatggttggttcctttaatttgttcttt |
303 |
Q |
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| T |
15153298 |
gttgaaccagcatagccaaaaatgaaaatttcagtacggtcaccaacactccttaacaagcagcaatggcaccatggttggttcctttaatttgttcttt |
15153397 |
T |
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| Q |
304 |
ttctcttgaaaggtttacaaaatctatctcaaatatagttaaataacatttatatgctcagtgaaattataatgctaaccaactcgatc |
392 |
Q |
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| T |
15153398 |
ttctcttgaaaggtttacaaaatctatctcaaatatagttaaataacatttatatgctcagtgaaattataatgctaaccaactcgatc |
15153486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 153
Target Start/End: Original strand, 15148616 - 15148727
Alignment:
| Q |
42 |
gagaatatcatggatgtgacgaaccatcaaataagagggacgtctaacattacacccgccatgaatcaaattcagtgcaacctttgaatcaaatttaatg |
141 |
Q |
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|||||||||| || | |||||||||||||||| ||||||| ||| |||||| |||| || |||||||||||| ||||||| || ||||| ||| || |
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| T |
15148616 |
gagaatatcaagggtttgacgaaccatcaaattagagggatatctcacattagacccatcaagaatcaaattcaatgcaaccatttaatcagattcaaca |
15148715 |
T |
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| Q |
142 |
tcaatatctcta |
153 |
Q |
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|||||||||||| |
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| T |
15148716 |
tcaatatctcta |
15148727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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